Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| OCCAPJFD_1 | 432320 | 431619 | WalR | 3.19e-107 | transcriptional regulatory protein | 80.34 | 99.57 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| OCCAPJFD_8 | 5867 | 6614 | rep38 | 748 / 1104 | 98.13 | CP002655 |
| OCCAPJFD_3 | 60 | 730 | repUS75 | 677 / 1059 | 83.01 | CP002393 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OCCAPJFD_1 | 0.0 | 1.0 | 0.0 |
| OCCAPJFD_2 | 0.0 | 1.0 | 0.0 |
| OCCAPJFD_3 | 1.0 | 0.0 | 1.0 |
| OCCAPJFD_4 | 1.0 | 0.0 | 1.0 |
| OCCAPJFD_5 | 1.0 | 0.0 | 1.0 |
| OCCAPJFD_6 | 1.0 | 0.0 | 1.0 |
| OCCAPJFD_7 | 1.0 | 0.0 | 1.0 |
| OCCAPJFD_8 | 1.0 | 0.0 | 1.0 |
| OCCAPJFD_9 | 1.0 | 0.0 | 1.0 |
| OCCAPJFD_10 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OCCAPJFD_1 | 1066286 | 1107993 | False | Myoviridae | VOG5353, VOG0650, VOG1309, VOG0186, VOG4855, VOG7236, VOG0044, VOG1183, VOG0152, VOG6970, VOG4732, VOG5878, VOG0586, VOG0198, VOG0796, VOG10227, VOG1912, VOG4564, VOG4865, VOG1915, VOG2779, VOG1942, VOG4778, VOG1353, VOG1881, VOG1883, VOG1352, VOG4699, VOG6163, VOG1956, VOG1433, VOG1348, VOG0573, VOG4550, VOG4691, VOG4845, VOG10914, VOG3298, VOG3298, VOG0641 |
| OCCAPJFD_1 | 1337725 | 1373405 | False | Myoviridae | VOG1309, VOG0186, VOG4566, VOG7236, VOG6005, VOG0822, VOG0044, VOG0198, VOG4699, VOG0611, VOG7407, VOG8453, VOG0720, VOG4564, VOG7118, VOG1329, VOG5795, VOG1353, VOG1883, VOG1352, VOG4699, VOG4865, VOG1433, VOG1348, VOG0573, VOG2349, VOG4691, VOG4845, VOG7896, VOG0861 |
| OCCAPJFD_1 | 1926999 | 1958380 | False | Myoviridae | VOG3298, VOG3298, VOG7230, VOG4845, VOG4691, VOG0573, VOG1348, VOG1433, VOG1956, VOG4910, VOG5706, VOG4699, VOG1352, VOG1883, VOG1881, VOG1353, VOG4710, VOG1887, VOG3434, VOG4555, VOG4564, VOG0720, VOG4544, VOG0275, VOG0796, VOG9295, VOG0198, VOG0586, VOG0102 |
| OCCAPJFD_1 | 2118358 | 2132353 | False | Siphoviridae | VOG0480, VOG8908, VOG0198, VOG0204, VOG4568, VOG4556, VOG5051, VOG4544, VOG4581, VOG4841, VOG0205, VOG4609, VOG4632 |
| OCCAPJFD_4 | 8810 | 10651 | False | Unknown | VOG0283, VOG0226 |
| OCCAPJFD_4 | 16167 | 42123 | True | Myoviridae | VOG0045, VOG0796, VOG10227, VOG0720, VOG4564, VOG4555, VOG1329, VOG1353, VOG1883, VOG1352, VOG4699, VOG4910, VOG1433, VOG4357, VOG1026, VOG1348, VOG0573, VOG4550, VOG4691, VOG4845 |
Phigaro v2.4.0 (Database: Jan. 2024 release)