Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| OBMOHKBO_9 | 300502 | 299798 | WalR | 9.92e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| OBMOHKBO_7 | 785991 | 785794 | CspR | 5.65e-32 | cold shock protein | 87.88 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| OBMOHKBO_4 | 621 | 1577 | repUS64 | 958 / 954 | 92.17 | JN601038 |
| OBMOHKBO_22 | 9792 | 10356 | rep38 | 567 / 903 | 90.83 | CP005943 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OBMOHKBO_1 | 0.0 | 1.0 | 0.0 |
| OBMOHKBO_2 | 1.0 | 0.0 | 1.0 |
| OBMOHKBO_4 | 1.0 | 0.0 | 1.0 |
| OBMOHKBO_7 | 0.0 | 1.0 | 0.0 |
| OBMOHKBO_9 | 0.0 | 1.0 | 0.0 |
| OBMOHKBO_11 | 0.0 | 1.0 | 0.0 |
| OBMOHKBO_12 | 0.0 | 1.0 | 0.0 |
| OBMOHKBO_13 | 0.0 | 1.0 | 0.0 |
| OBMOHKBO_14 | 0.0 | 1.0 | 0.0 |
| OBMOHKBO_15 | 0.0 | 1.0 | 0.0 |
| OBMOHKBO_17 | 0.0 | 1.0 | 0.0 |
| OBMOHKBO_22 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OBMOHKBO_7 | 359759 | 383583 | False | Siphoviridae | VOG0221, VOG4581, VOG1886, VOG4556, VOG4568, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG6163, VOG4605, VOG4599, VOG6455, VOG7896, VOG0753, VOG0703, VOG8294, VOG6495 |
| OBMOHKBO_9 | 371112 | 381303 | False | Siphoviridae | VOG4632, VOG4609, VOG0205, VOG4841, VOG4581, VOG4544, VOG5051, VOG4556, VOG4568, VOG0204 |
Phigaro v2.4.0 (Database: Jan. 2024 release)