Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HALGJFKO_87 | 4751 | 4557 | CspA | 1.40e-28 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HALGJFKO_2 | 0.0 | 1.0 | 0.0 |
| HALGJFKO_4 | 0.0 | 1.0 | 0.0 |
| HALGJFKO_5 | 0.0 | 1.0 | 0.0 |
| HALGJFKO_16 | 0.0 | 1.0 | 0.0 |
| HALGJFKO_27 | 0.0 | 1.0 | 0.0 |
| HALGJFKO_28 | 0.0 | 1.0 | 0.0 |
| HALGJFKO_29 | 0.0 | 1.0 | 0.0 |
| HALGJFKO_30 | 0.0 | 1.0 | 0.0 |
| HALGJFKO_31 | 0.0 | 1.0 | 0.0 |
| HALGJFKO_32 | 0.0 | 1.0 | 0.0 |
| HALGJFKO_33 | 0.0 | 1.0 | 0.0 |
| HALGJFKO_34 | 0.0 | 1.0 | 0.0 |
| HALGJFKO_35 | 0.0 | 1.0 | 0.0 |
| HALGJFKO_36 | 0.0 | 1.0 | 0.0 |
| HALGJFKO_37 | 0.0 | 1.0 | 0.0 |
| HALGJFKO_38 | 0.0 | 1.0 | 0.0 |
| HALGJFKO_39 | 0.0 | 1.0 | 0.0 |
| HALGJFKO_40 | 0.0 | 1.0 | 0.0 |
| HALGJFKO_41 | 0.0 | 1.0 | 0.0 |
| HALGJFKO_42 | 0.0 | 1.0 | 0.0 |
| HALGJFKO_43 | 0.0 | 1.0 | 0.0 |
| HALGJFKO_44 | 0.0 | 1.0 | 0.0 |
| HALGJFKO_45 | 1.0 | 0.0 | 1.0 |
| HALGJFKO_46 | 0.0 | 1.0 | 0.0 |
| HALGJFKO_47 | 0.0 | 1.0 | 0.0 |
| HALGJFKO_48 | 0.0 | 1.0 | 0.0 |
| HALGJFKO_49 | 0.0 | 1.0 | 0.0 |
| HALGJFKO_50 | 0.0 | 1.0 | 0.0 |
| HALGJFKO_51 | 0.0 | 1.0 | 0.0 |
| HALGJFKO_52 | 0.0 | 1.0 | 0.0 |
| HALGJFKO_53 | 0.0 | 1.0 | 0.0 |
| HALGJFKO_54 | 0.0 | 1.0 | 0.0 |
| HALGJFKO_55 | 0.0 | 1.0 | 0.0 |
| HALGJFKO_56 | 0.0 | 1.0 | 0.0 |
| HALGJFKO_57 | 0.0 | 1.0 | 0.0 |
| HALGJFKO_58 | 0.0 | 1.0 | 0.0 |
| HALGJFKO_59 | 1.0 | 0.0 | 1.0 |
| HALGJFKO_60 | 0.0 | 1.0 | 0.0 |
| HALGJFKO_61 | 0.0 | 1.0 | 0.0 |
| HALGJFKO_62 | 0.0 | 1.0 | 0.0 |
| HALGJFKO_63 | 1.0 | 0.0 | 1.0 |
| HALGJFKO_64 | 1.0 | 0.0 | 1.0 |
| HALGJFKO_65 | 1.0 | 0.0 | 1.0 |
| HALGJFKO_66 | 0.0 | 1.0 | 0.0 |
| HALGJFKO_67 | 0.0 | 1.0 | 0.0 |
| HALGJFKO_68 | 0.0 | 1.0 | 0.0 |
| HALGJFKO_69 | 1.0 | 0.0 | 1.0 |
| HALGJFKO_71 | 1.0 | 0.0 | 1.0 |
| HALGJFKO_73 | 0.0 | 1.0 | 0.0 |
| HALGJFKO_74 | 0.0 | 1.0 | 0.0 |
| HALGJFKO_75 | 1.0 | 0.0 | 1.0 |
| HALGJFKO_76 | 1.0 | 0.0 | 1.0 |
| HALGJFKO_77 | 0.0 | 1.0 | 0.0 |
| HALGJFKO_78 | 1.0 | 0.0 | 1.0 |
| HALGJFKO_79 | 1.0 | 0.0 | 1.0 |
| HALGJFKO_80 | 1.0 | 0.0 | 1.0 |
| HALGJFKO_81 | 1.0 | 0.0 | 1.0 |
| HALGJFKO_83 | 0.0 | 1.0 | 0.0 |
| HALGJFKO_87 | 0.0 | 1.0 | 0.0 |
| HALGJFKO_96 | 0.0 | 1.0 | 0.0 |
| HALGJFKO_103 | 0.0 | 1.0 | 0.0 |
| HALGJFKO_106 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HALGJFKO_33 | 90841 | 101741 | False | Siphoviridae | VOG4606, VOG0205, VOG4841, VOG4581, VOG4544, VOG4556, VOG4568, VOG0198, VOG0204 |
| HALGJFKO_42 | 1058 | 21316 | False | Siphoviridae | VOG1050, VOG10972, VOG3462, VOG0801, VOG6163, VOG0725, VOG0799, VOG0724, VOG1353, VOG4713, VOG1329, VOG4555, VOG0638, VOG4564, VOG0720, VOG10227 |
| HALGJFKO_45 | 1564 | 17225 | False | Siphoviridae | VOG4581, VOG9312, VOG0866, VOG1886, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG0209, VOG6163, VOG0801 |
Phigaro v2.4.0 (Database: Jan. 2024 release)