Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| KMGIMAGI_11 | 57844 | 57140 | WalR | 4.94e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| KMGIMAGI_29 | 43651 | 43845 | CspR | 2.53e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| KMGIMAGI_29 | 43651 | 43848 | CspA | 3.87e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| KMGIMAGI_49 | 10668 | 11728 | repUS73 | 1061 / 1101 | 97.17 | CP002654 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KMGIMAGI_9 | 0.0 | 1.0 | 0.0 |
| KMGIMAGI_10 | 0.0 | 1.0 | 0.0 |
| KMGIMAGI_11 | 0.0 | 1.0 | 0.0 |
| KMGIMAGI_13 | 0.0 | 1.0 | 0.0 |
| KMGIMAGI_17 | 0.0 | 1.0 | 0.0 |
| KMGIMAGI_20 | 0.0 | 1.0 | 0.0 |
| KMGIMAGI_25 | 0.0 | 1.0 | 0.0 |
| KMGIMAGI_28 | 0.0 | 1.0 | 0.0 |
| KMGIMAGI_29 | 0.0 | 1.0 | 0.0 |
| KMGIMAGI_30 | 0.0 | 1.0 | 0.0 |
| KMGIMAGI_31 | 0.0 | 1.0 | 0.0 |
| KMGIMAGI_32 | 0.0 | 1.0 | 0.0 |
| KMGIMAGI_33 | 0.0 | 1.0 | 0.0 |
| KMGIMAGI_34 | 0.0 | 1.0 | 0.0 |
| KMGIMAGI_35 | 0.0 | 1.0 | 0.0 |
| KMGIMAGI_36 | 0.0 | 1.0 | 0.0 |
| KMGIMAGI_37 | 0.0 | 1.0 | 0.0 |
| KMGIMAGI_38 | 0.0 | 1.0 | 0.0 |
| KMGIMAGI_39 | 0.0 | 1.0 | 0.0 |
| KMGIMAGI_40 | 0.0 | 1.0 | 0.0 |
| KMGIMAGI_41 | 0.0 | 1.0 | 0.0 |
| KMGIMAGI_42 | 0.0 | 1.0 | 0.0 |
| KMGIMAGI_43 | 0.0 | 1.0 | 0.0 |
| KMGIMAGI_44 | 0.0 | 1.0 | 0.0 |
| KMGIMAGI_45 | 0.0 | 1.0 | 0.0 |
| KMGIMAGI_46 | 0.0 | 1.0 | 0.0 |
| KMGIMAGI_47 | 0.0 | 1.0 | 0.0 |
| KMGIMAGI_48 | 1.0 | 0.0 | 1.0 |
| KMGIMAGI_49 | 1.0 | 0.0 | 1.0 |
| KMGIMAGI_50 | 0.0 | 1.0 | 0.0 |
| KMGIMAGI_51 | 0.0 | 1.0 | 0.0 |
| KMGIMAGI_52 | 0.0 | 1.0 | 0.0 |
| KMGIMAGI_53 | 0.0 | 1.0 | 0.0 |
| KMGIMAGI_54 | 0.0 | 1.0 | 0.0 |
| KMGIMAGI_55 | 0.0 | 1.0 | 0.0 |
| KMGIMAGI_56 | 1.0 | 0.0 | 1.0 |
| KMGIMAGI_57 | 0.0 | 1.0 | 0.0 |
| KMGIMAGI_59 | 1.0 | 0.0 | 1.0 |
| KMGIMAGI_62 | 0.0 | 1.0 | 0.0 |
| KMGIMAGI_66 | 0.0 | 1.0 | 0.0 |
| KMGIMAGI_67 | 0.0 | 1.0 | 0.0 |
| KMGIMAGI_68 | 0.0 | 1.0 | 0.0 |
| KMGIMAGI_70 | 0.0 | 1.0 | 0.0 |
| KMGIMAGI_71 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| KMGIMAGI_31 | 6367 | 35338 | False | Siphoviridae | VOG0189, VOG5047, VOG4567, VOG0198, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0660, VOG6163, VOG4605, VOG4599, VOG10957, VOG8870 |
| KMGIMAGI_32 | 13758 | 15549 | False | Unknown | VOG2154, VOG5944, VOG2154 |
| KMGIMAGI_41 | 3899 | 27095 | False | Siphoviridae | VOG0186, VOG5046, VOG0189, VOG4552, VOG4693, VOG0198, VOG1183, VOG5616, VOG0796, VOG10227, VOG0720, VOG4564, VOG3434, VOG1887, VOG4713, VOG0723, VOG5660, VOG0799, VOG0725, VOG1323, VOG4545 |
| KMGIMAGI_43 | 7649 | 26568 | False | Siphoviridae | VOG4632, VOG4609, VOG0205, VOG4841, VOG4581, VOG4544, VOG2935, VOG4556, VOG4568, VOG0204, VOG0198, VOG3477, VOG0275, VOG4122, VOG7656, VOG4602, VOG6495 |
Phigaro v2.4.0 (Database: Jan. 2024 release)