Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JJAPCHGD_22 | 216374 | 217078 | WalR | 2.60e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| JJAPCHGD_4 | 43651 | 43845 | CspR | 2.52e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| JJAPCHGD_4 | 43651 | 43848 | CspA | 3.87e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| JJAPCHGD_7 | 5106 | 6166 | repUS73 | 1061 / 1101 | 97.17 | CP002654 |
| JJAPCHGD_9 | 15164 | 16198 | rep38 | 1044 / 1104 | 82.57 | CP002655 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JJAPCHGD_1 | 0.0 | 1.0 | 0.0 |
| JJAPCHGD_2 | 0.0 | 1.0 | 0.0 |
| JJAPCHGD_3 | 0.0 | 1.0 | 0.0 |
| JJAPCHGD_4 | 0.0 | 1.0 | 0.0 |
| JJAPCHGD_5 | 0.0 | 1.0 | 0.0 |
| JJAPCHGD_6 | 0.0 | 1.0 | 0.0 |
| JJAPCHGD_7 | 1.0 | 0.0 | 1.0 |
| JJAPCHGD_8 | 1.0 | 0.0 | 1.0 |
| JJAPCHGD_9 | 1.0 | 0.0 | 1.0 |
| JJAPCHGD_10 | 1.0 | 0.0 | 1.0 |
| JJAPCHGD_11 | 0.0 | 1.0 | 0.0 |
| JJAPCHGD_12 | 0.0 | 1.0 | 0.0 |
| JJAPCHGD_13 | 1.0 | 0.0 | 1.0 |
| JJAPCHGD_14 | 1.0 | 0.0 | 1.0 |
| JJAPCHGD_15 | 1.0 | 0.0 | 1.0 |
| JJAPCHGD_18 | 1.0 | 0.0 | 1.0 |
| JJAPCHGD_19 | 1.0 | 0.0 | 1.0 |
| JJAPCHGD_20 | 1.0 | 0.0 | 1.0 |
| JJAPCHGD_22 | 0.0 | 1.0 | 0.0 |
| JJAPCHGD_32 | 0.0 | 1.0 | 0.0 |
| JJAPCHGD_33 | 0.0 | 1.0 | 0.0 |
| JJAPCHGD_38 | 0.0 | 1.0 | 0.0 |
| JJAPCHGD_39 | 0.0 | 1.0 | 0.0 |
| JJAPCHGD_40 | 0.0 | 1.0 | 0.0 |
| JJAPCHGD_41 | 0.0 | 1.0 | 0.0 |
| JJAPCHGD_42 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JJAPCHGD_11 | 151378 | 178808 | False | Siphoviridae | VOG5047, VOG4567, VOG0198, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0660, VOG6163, VOG4605, VOG4599, VOG10957, VOG8870 |
| JJAPCHGD_33 | 115715 | 169245 | False | Siphoviridae | VOG4632, VOG4609, VOG0205, VOG4841, VOG4581, VOG4544, VOG2935, VOG4556, VOG4568, VOG0204, VOG0198, VOG3477, VOG0275, VOG4122, VOG7656, VOG4602, VOG6495, VOG6495, VOG6139, VOG8615, VOG1638, VOG11003, VOG6495, VOG0181, VOG7298, VOG1302, VOG1309, VOG0186, VOG5046, VOG0189, VOG4552, VOG4693, VOG0198, VOG1183, VOG5616, VOG0796, VOG10227, VOG0720, VOG4564, VOG3434, VOG1887, VOG4713, VOG0723, VOG5660, VOG0799, VOG0725, VOG1323, VOG4545, VOG0801, VOG3462, VOG3463, VOG4660, VOG4705, VOG8294, VOG1637 |
Phigaro v2.4.0 (Database: Jan. 2024 release)