Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FIECBGOD_13 | 7191 | 7676 | lnuA | ARO:3002835 | lnuA | 97.52 | 100.00 | M14039.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| FIECBGOD_13 | 7191 | 7676 | lnu(A) | Lincomycin | 98.77 | 100.00 | M14039 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FIECBGOD_13 | 7191 | 7673 | lnu(A) | lincosamide nucleotidyltransferase Lnu(A) | EXACTX | 100.00 | 100.00 | WP_001829870.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| FIECBGOD_114 | 72259 | 72453 | CspA | 4.60e-28 | cold shock protein | 83.08 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| FIECBGOD_4 | 0.0 | 1.0 | 0.0 |
| FIECBGOD_8 | 0.0 | 1.0 | 0.0 |
| FIECBGOD_11 | 0.0 | 1.0 | 0.0 |
| FIECBGOD_12 | 0.0 | 1.0 | 0.0 |
| FIECBGOD_13 | 0.0 | 1.0 | 0.0 |
| FIECBGOD_15 | 0.0 | 1.0 | 0.0 |
| FIECBGOD_16 | 0.0 | 1.0 | 0.0 |
| FIECBGOD_18 | 0.0 | 1.0 | 0.0 |
| FIECBGOD_19 | 0.0 | 1.0 | 0.0 |
| FIECBGOD_20 | 0.0 | 1.0 | 0.0 |
| FIECBGOD_21 | 0.0 | 1.0 | 0.0 |
| FIECBGOD_22 | 0.0 | 1.0 | 0.0 |
| FIECBGOD_23 | 0.0 | 1.0 | 0.0 |
| FIECBGOD_24 | 0.0 | 1.0 | 0.0 |
| FIECBGOD_25 | 0.0 | 1.0 | 0.0 |
| FIECBGOD_36 | 0.0 | 1.0 | 0.0 |
| FIECBGOD_47 | 0.0 | 1.0 | 0.0 |
| FIECBGOD_56 | 0.0 | 1.0 | 0.0 |
| FIECBGOD_57 | 0.0 | 1.0 | 0.0 |
| FIECBGOD_58 | 0.0 | 1.0 | 0.0 |
| FIECBGOD_59 | 0.0 | 1.0 | 0.0 |
| FIECBGOD_60 | 0.0 | 1.0 | 0.0 |
| FIECBGOD_61 | 0.0 | 1.0 | 0.0 |
| FIECBGOD_62 | 0.0 | 1.0 | 0.0 |
| FIECBGOD_63 | 0.0 | 1.0 | 0.0 |
| FIECBGOD_64 | 0.0 | 1.0 | 0.0 |
| FIECBGOD_65 | 0.0 | 1.0 | 0.0 |
| FIECBGOD_66 | 0.0 | 1.0 | 0.0 |
| FIECBGOD_67 | 0.0 | 1.0 | 0.0 |
| FIECBGOD_68 | 0.0 | 1.0 | 0.0 |
| FIECBGOD_69 | 1.0 | 0.0 | 1.0 |
| FIECBGOD_70 | 0.0 | 1.0 | 0.0 |
| FIECBGOD_71 | 0.0 | 1.0 | 0.0 |
| FIECBGOD_72 | 0.0 | 1.0 | 0.0 |
| FIECBGOD_73 | 0.0 | 1.0 | 0.0 |
| FIECBGOD_74 | 0.0 | 1.0 | 0.0 |
| FIECBGOD_75 | 0.0 | 1.0 | 0.0 |
| FIECBGOD_76 | 1.0 | 0.0 | 1.0 |
| FIECBGOD_77 | 0.0 | 1.0 | 0.0 |
| FIECBGOD_78 | 0.0 | 1.0 | 0.0 |
| FIECBGOD_79 | 0.0 | 1.0 | 0.0 |
| FIECBGOD_80 | 0.0 | 1.0 | 0.0 |
| FIECBGOD_81 | 0.0 | 1.0 | 0.0 |
| FIECBGOD_82 | 0.0 | 1.0 | 0.0 |
| FIECBGOD_83 | 0.0 | 1.0 | 0.0 |
| FIECBGOD_84 | 0.0 | 1.0 | 0.0 |
| FIECBGOD_85 | 0.0 | 1.0 | 0.0 |
| FIECBGOD_86 | 0.0 | 1.0 | 0.0 |
| FIECBGOD_87 | 1.0 | 0.0 | 1.0 |
| FIECBGOD_88 | 1.0 | 0.0 | 1.0 |
| FIECBGOD_89 | 1.0 | 0.0 | 1.0 |
| FIECBGOD_90 | 0.0 | 1.0 | 0.0 |
| FIECBGOD_91 | 0.0 | 1.0 | 0.0 |
| FIECBGOD_92 | 0.0 | 1.0 | 0.0 |
| FIECBGOD_93 | 0.0 | 1.0 | 0.0 |
| FIECBGOD_94 | 0.0 | 1.0 | 0.0 |
| FIECBGOD_95 | 0.0 | 1.0 | 0.0 |
| FIECBGOD_96 | 0.0 | 1.0 | 0.0 |
| FIECBGOD_98 | 1.0 | 0.0 | 1.0 |
| FIECBGOD_99 | 1.0 | 0.0 | 1.0 |
| FIECBGOD_100 | 0.0 | 1.0 | 0.0 |
| FIECBGOD_102 | 0.0 | 1.0 | 0.0 |
| FIECBGOD_103 | 1.0 | 0.0 | 1.0 |
| FIECBGOD_104 | 0.0 | 1.0 | 0.0 |
| FIECBGOD_105 | 1.0 | 0.0 | 1.0 |
| FIECBGOD_106 | 0.0 | 1.0 | 0.0 |
| FIECBGOD_107 | 1.0 | 0.0 | 1.0 |
| FIECBGOD_108 | 1.0 | 0.0 | 1.0 |
| FIECBGOD_109 | 1.0 | 0.0 | 1.0 |
| FIECBGOD_110 | 1.0 | 0.0 | 1.0 |
| FIECBGOD_111 | 0.0 | 1.0 | 0.0 |
| FIECBGOD_112 | 0.0 | 1.0 | 0.0 |
| FIECBGOD_113 | 1.0 | 0.0 | 1.0 |
| FIECBGOD_114 | 0.0 | 1.0 | 0.0 |
| FIECBGOD_115 | 1.0 | 0.0 | 1.0 |
| FIECBGOD_116 | 1.0 | 0.0 | 1.0 |
| FIECBGOD_117 | 1.0 | 0.0 | 1.0 |
| FIECBGOD_122 | 0.0 | 1.0 | 0.0 |
| FIECBGOD_129 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| FIECBGOD_4 | 53039 | 71790 | False | Siphoviridae | VOG1198, VOG7176, VOG8473, VOG4824, VOG0054, VOG1637, VOG5008, VOG7454, VOG3462, VOG0801, VOG6163, VOG9471 |
| FIECBGOD_21 | 58158 | 86830 | True | Siphoviridae | VOG0221, VOG0221, VOG9502, VOG0641, VOG4589, VOG0204, VOG4553, VOG4573, VOG4556, VOG4544, VOG4571, VOG4581, VOG0198, VOG4548, VOG0327, VOG4606, VOG0026, VOG0021, VOG1047, VOG7438, VOG0052, VOG5410, VOG4548 |
| FIECBGOD_21 | 103075 | 108906 | True | Siphoviridae | VOG0221, VOG0221, VOG9409, VOG0641, VOG4589, VOG0204, VOG4553 |
| FIECBGOD_60 | 72160 | 78162 | False | Siphoviridae | VOG9897, VOG4821, VOG4662, VOG9312, VOG0862, VOG8520, VOG2147 |
| FIECBGOD_60 | 85005 | 96030 | False | Myoviridae | VOG0198, VOG0686, VOG0866, VOG0866, VOG4841, VOG4581, VOG4544, VOG4556, VOG4568 |
Phigaro v2.4.0 (Database: Jan. 2024 release)