Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HJKBDKNK_14 | 44987 | 45472 | lnuA | ARO:3002835 | lnuA | 97.52 | 100.00 | M14039.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| HJKBDKNK_14 | 44987 | 45472 | lnu(A) | Lincomycin | 98.77 | 100.00 | M14039 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HJKBDKNK_14 | 44990 | 45472 | lnu(A) | lincosamide nucleotidyltransferase Lnu(A) | EXACTX | 100.00 | 100.00 | WP_001829870.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HJKBDKNK_118 | 72259 | 72453 | CspA | 4.60e-28 | cold shock protein | 83.08 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HJKBDKNK_4 | 0.0 | 1.0 | 0.0 |
| HJKBDKNK_7 | 0.0 | 1.0 | 0.0 |
| HJKBDKNK_11 | 0.0 | 1.0 | 0.0 |
| HJKBDKNK_14 | 0.0 | 1.0 | 0.0 |
| HJKBDKNK_17 | 0.0 | 1.0 | 0.0 |
| HJKBDKNK_18 | 0.0 | 1.0 | 0.0 |
| HJKBDKNK_19 | 0.0 | 1.0 | 0.0 |
| HJKBDKNK_21 | 0.0 | 1.0 | 0.0 |
| HJKBDKNK_22 | 0.0 | 1.0 | 0.0 |
| HJKBDKNK_23 | 0.0 | 1.0 | 0.0 |
| HJKBDKNK_24 | 0.0 | 1.0 | 0.0 |
| HJKBDKNK_26 | 0.0 | 1.0 | 0.0 |
| HJKBDKNK_27 | 0.0 | 1.0 | 0.0 |
| HJKBDKNK_28 | 0.0 | 1.0 | 0.0 |
| HJKBDKNK_34 | 0.0 | 1.0 | 0.0 |
| HJKBDKNK_45 | 0.0 | 1.0 | 0.0 |
| HJKBDKNK_56 | 0.0 | 1.0 | 0.0 |
| HJKBDKNK_59 | 0.0 | 1.0 | 0.0 |
| HJKBDKNK_60 | 0.0 | 1.0 | 0.0 |
| HJKBDKNK_61 | 0.0 | 1.0 | 0.0 |
| HJKBDKNK_62 | 0.0 | 1.0 | 0.0 |
| HJKBDKNK_63 | 0.0 | 1.0 | 0.0 |
| HJKBDKNK_64 | 0.0 | 1.0 | 0.0 |
| HJKBDKNK_65 | 0.0 | 1.0 | 0.0 |
| HJKBDKNK_66 | 0.0 | 1.0 | 0.0 |
| HJKBDKNK_67 | 0.0 | 1.0 | 0.0 |
| HJKBDKNK_68 | 0.0 | 1.0 | 0.0 |
| HJKBDKNK_69 | 0.0 | 1.0 | 0.0 |
| HJKBDKNK_70 | 0.0 | 1.0 | 0.0 |
| HJKBDKNK_71 | 0.0 | 1.0 | 0.0 |
| HJKBDKNK_72 | 0.0 | 1.0 | 0.0 |
| HJKBDKNK_73 | 0.0 | 1.0 | 0.0 |
| HJKBDKNK_74 | 0.0 | 1.0 | 0.0 |
| HJKBDKNK_75 | 0.0 | 1.0 | 0.0 |
| HJKBDKNK_76 | 0.0 | 1.0 | 0.0 |
| HJKBDKNK_77 | 0.0 | 1.0 | 0.0 |
| HJKBDKNK_78 | 1.0 | 0.0 | 1.0 |
| HJKBDKNK_79 | 0.0 | 1.0 | 0.0 |
| HJKBDKNK_80 | 0.0 | 1.0 | 0.0 |
| HJKBDKNK_81 | 0.0 | 1.0 | 0.0 |
| HJKBDKNK_82 | 1.0 | 0.0 | 1.0 |
| HJKBDKNK_83 | 0.0 | 1.0 | 0.0 |
| HJKBDKNK_84 | 0.0 | 1.0 | 0.0 |
| HJKBDKNK_85 | 0.0 | 1.0 | 0.0 |
| HJKBDKNK_86 | 0.0 | 1.0 | 0.0 |
| HJKBDKNK_87 | 0.0 | 1.0 | 0.0 |
| HJKBDKNK_88 | 0.0 | 1.0 | 0.0 |
| HJKBDKNK_89 | 0.0 | 1.0 | 0.0 |
| HJKBDKNK_90 | 0.0 | 1.0 | 0.0 |
| HJKBDKNK_91 | 1.0 | 0.0 | 1.0 |
| HJKBDKNK_92 | 1.0 | 0.0 | 1.0 |
| HJKBDKNK_93 | 0.0 | 1.0 | 0.0 |
| HJKBDKNK_94 | 0.0 | 1.0 | 0.0 |
| HJKBDKNK_95 | 0.0 | 1.0 | 0.0 |
| HJKBDKNK_96 | 0.0 | 1.0 | 0.0 |
| HJKBDKNK_97 | 0.0 | 1.0 | 0.0 |
| HJKBDKNK_98 | 1.0 | 0.0 | 1.0 |
| HJKBDKNK_99 | 0.0 | 1.0 | 0.0 |
| HJKBDKNK_100 | 0.0 | 1.0 | 0.0 |
| HJKBDKNK_102 | 1.0 | 0.0 | 1.0 |
| HJKBDKNK_103 | 1.0 | 0.0 | 1.0 |
| HJKBDKNK_104 | 0.0 | 1.0 | 0.0 |
| HJKBDKNK_106 | 0.0 | 1.0 | 0.0 |
| HJKBDKNK_107 | 0.0 | 1.0 | 0.0 |
| HJKBDKNK_108 | 1.0 | 0.0 | 1.0 |
| HJKBDKNK_109 | 1.0 | 0.0 | 1.0 |
| HJKBDKNK_110 | 0.0 | 1.0 | 0.0 |
| HJKBDKNK_111 | 0.0 | 1.0 | 0.0 |
| HJKBDKNK_112 | 1.0 | 0.0 | 1.0 |
| HJKBDKNK_113 | 1.0 | 0.0 | 1.0 |
| HJKBDKNK_114 | 1.0 | 0.0 | 1.0 |
| HJKBDKNK_115 | 1.0 | 0.0 | 1.0 |
| HJKBDKNK_116 | 0.0 | 1.0 | 0.0 |
| HJKBDKNK_117 | 0.0 | 1.0 | 0.0 |
| HJKBDKNK_118 | 0.0 | 1.0 | 0.0 |
| HJKBDKNK_119 | 1.0 | 0.0 | 1.0 |
| HJKBDKNK_120 | 0.0 | 1.0 | 0.0 |
| HJKBDKNK_122 | 0.0 | 1.0 | 0.0 |
| HJKBDKNK_123 | 1.0 | 0.0 | 1.0 |
| HJKBDKNK_128 | 0.0 | 1.0 | 0.0 |
| HJKBDKNK_135 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HJKBDKNK_24 | 4725 | 10556 | False | Siphoviridae | VOG1844, VOG4553, VOG0204, VOG4589, VOG0641, VOG9409, VOG0221 |
| HJKBDKNK_24 | 26801 | 55473 | True | Siphoviridae | VOG11003, VOG4548, VOG5410, VOG0052, VOG7438, VOG1047, VOG0021, VOG0026, VOG4606, VOG0327, VOG4548, VOG0198, VOG4581, VOG4571, VOG4544, VOG4556, VOG4573, VOG4553, VOG0204, VOG4589, VOG0641, VOG9502, VOG0221, VOG0221 |
| HJKBDKNK_63 | 1070 | 12653 | False | Siphoviridae | VOG0204, VOG4553, VOG4568, VOG4556, VOG4544, VOG4581, VOG4841, VOG0866, VOG0866, VOG0686 |
| HJKBDKNK_63 | 19180 | 25498 | False | Siphoviridae | VOG3478, VOG2147, VOG8520, VOG0862, VOG9312, VOG4662, VOG4821 |
| HJKBDKNK_135 | 1246 | 19997 | False | Siphoviridae | VOG2225, VOG9471, VOG6163, VOG0801, VOG3462, VOG7454, VOG5008, VOG1637, VOG0054, VOG4824, VOG8473, VOG7176 |
Phigaro v2.4.0 (Database: Jan. 2024 release)