Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FNBFDDNB_15 | 637 | 3963 | Bifidobacterium bifidum ileS conferring resistance to mupirocin | ARO:3003730 | Bbif_ileS_MUP | 99.37 | 100.09 | CP001840.1 |
| FNBFDDNB_56 | 56 | 3688 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 91.22 | 102.02 | NC_008618.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| FNBFDDNB_1 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_2 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_3 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_4 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_5 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_6 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_7 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_8 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_9 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_10 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_11 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_12 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_13 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_14 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_15 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_16 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_17 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_18 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_19 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_20 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_21 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_22 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_23 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_24 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_25 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_26 | 1.0 | 0.0 | 1.0 |
| FNBFDDNB_27 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_28 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_29 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_30 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_31 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_32 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_33 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_34 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_35 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_36 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_37 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_38 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_39 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_40 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_41 | 1.0 | 0.0 | 1.0 |
| FNBFDDNB_42 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_43 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_44 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_45 | 1.0 | 0.0 | 1.0 |
| FNBFDDNB_46 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_47 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_48 | 1.0 | 0.0 | 1.0 |
| FNBFDDNB_49 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_50 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_51 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_52 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_53 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_54 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_55 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_56 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_57 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_58 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_59 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_60 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_61 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_62 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_63 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_64 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_65 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_66 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_67 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_68 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_69 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_70 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_71 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_72 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_73 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_74 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_75 | 1.0 | 0.0 | 1.0 |
| FNBFDDNB_76 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_77 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_78 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_79 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_80 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_82 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_83 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_84 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_86 | 1.0 | 0.0 | 1.0 |
| FNBFDDNB_87 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_88 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_89 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_90 | 1.0 | 0.0 | 1.0 |
| FNBFDDNB_91 | 1.0 | 0.0 | 1.0 |
| FNBFDDNB_92 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_93 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_97 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_98 | 1.0 | 0.0 | 1.0 |
| FNBFDDNB_99 | 1.0 | 0.0 | 1.0 |
| FNBFDDNB_101 | 1.0 | 0.0 | 1.0 |
| FNBFDDNB_103 | 1.0 | 0.0 | 1.0 |
| FNBFDDNB_104 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_105 | 1.0 | 0.0 | 1.0 |
| FNBFDDNB_107 | 1.0 | 0.0 | 1.0 |
| FNBFDDNB_108 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_109 | 1.0 | 0.0 | 1.0 |
| FNBFDDNB_112 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_113 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_116 | 1.0 | 0.0 | 1.0 |
| FNBFDDNB_117 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_118 | 0.0 | 1.0 | 0.0 |
| FNBFDDNB_119 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| FNBFDDNB_2 | 72202 | 76749 | False | Unknown | VOG0585, VOG3304, VOG0010 |
| FNBFDDNB_25 | 2106 | 22819 | False | Siphoviridae | VOG0991, VOG0275, VOG3654, VOG4545, VOG4582, VOG3651, VOG4557, VOG4621, VOG1159, VOG3409, VOG1581, VOG0880, VOG4553, VOG4555, VOG4576, VOG0720, VOG4544, VOG1574, VOG0183, VOG1422, VOG9852 |
Phigaro v2.4.0 (Database: Jan. 2024 release)