Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LIGMNPKD_16 | 53124 | 56807 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 91.22 | 103.46 | NC_008618.1 |
| LIGMNPKD_60 | 9774 | 13100 | Bifidobacterium bifidum ileS conferring resistance to mupirocin | ARO:3003730 | Bbif_ileS_MUP | 99.55 | 100.09 | CP001840.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LIGMNPKD_1 | 0.0 | 1.0 | 0.0 |
| LIGMNPKD_2 | 0.0 | 1.0 | 0.0 |
| LIGMNPKD_3 | 0.0 | 1.0 | 0.0 |
| LIGMNPKD_4 | 0.0 | 1.0 | 0.0 |
| LIGMNPKD_5 | 0.0 | 1.0 | 0.0 |
| LIGMNPKD_6 | 0.0 | 1.0 | 0.0 |
| LIGMNPKD_7 | 0.0 | 1.0 | 0.0 |
| LIGMNPKD_8 | 0.0 | 1.0 | 0.0 |
| LIGMNPKD_9 | 0.0 | 1.0 | 0.0 |
| LIGMNPKD_10 | 0.0 | 1.0 | 0.0 |
| LIGMNPKD_11 | 0.0 | 1.0 | 0.0 |
| LIGMNPKD_12 | 0.0 | 1.0 | 0.0 |
| LIGMNPKD_13 | 0.0 | 1.0 | 0.0 |
| LIGMNPKD_14 | 0.0 | 1.0 | 0.0 |
| LIGMNPKD_15 | 0.0 | 1.0 | 0.0 |
| LIGMNPKD_16 | 0.0 | 1.0 | 0.0 |
| LIGMNPKD_17 | 0.0 | 1.0 | 0.0 |
| LIGMNPKD_18 | 0.0 | 1.0 | 0.0 |
| LIGMNPKD_19 | 0.0 | 1.0 | 0.0 |
| LIGMNPKD_20 | 0.0 | 1.0 | 0.0 |
| LIGMNPKD_21 | 0.0 | 1.0 | 0.0 |
| LIGMNPKD_22 | 0.0 | 1.0 | 0.0 |
| LIGMNPKD_23 | 0.0 | 1.0 | 0.0 |
| LIGMNPKD_24 | 0.0 | 1.0 | 0.0 |
| LIGMNPKD_25 | 0.0 | 1.0 | 0.0 |
| LIGMNPKD_26 | 0.0 | 1.0 | 0.0 |
| LIGMNPKD_27 | 0.0 | 1.0 | 0.0 |
| LIGMNPKD_28 | 0.0 | 1.0 | 0.0 |
| LIGMNPKD_29 | 0.0 | 1.0 | 0.0 |
| LIGMNPKD_30 | 0.0 | 1.0 | 0.0 |
| LIGMNPKD_31 | 0.0 | 1.0 | 0.0 |
| LIGMNPKD_32 | 0.0 | 1.0 | 0.0 |
| LIGMNPKD_33 | 0.0 | 1.0 | 0.0 |
| LIGMNPKD_34 | 0.0 | 1.0 | 0.0 |
| LIGMNPKD_35 | 0.0 | 1.0 | 0.0 |
| LIGMNPKD_36 | 0.0 | 1.0 | 0.0 |
| LIGMNPKD_37 | 0.0 | 1.0 | 0.0 |
| LIGMNPKD_38 | 0.0 | 1.0 | 0.0 |
| LIGMNPKD_39 | 0.0 | 1.0 | 0.0 |
| LIGMNPKD_40 | 0.0 | 1.0 | 0.0 |
| LIGMNPKD_41 | 0.0 | 1.0 | 0.0 |
| LIGMNPKD_42 | 0.0 | 1.0 | 0.0 |
| LIGMNPKD_43 | 0.0 | 1.0 | 0.0 |
| LIGMNPKD_44 | 0.0 | 1.0 | 0.0 |
| LIGMNPKD_45 | 0.0 | 1.0 | 0.0 |
| LIGMNPKD_46 | 0.0 | 1.0 | 0.0 |
| LIGMNPKD_47 | 0.0 | 1.0 | 0.0 |
| LIGMNPKD_48 | 0.0 | 1.0 | 0.0 |
| LIGMNPKD_49 | 0.0 | 1.0 | 0.0 |
| LIGMNPKD_50 | 1.0 | 0.0 | 1.0 |
| LIGMNPKD_51 | 0.0 | 1.0 | 0.0 |
| LIGMNPKD_52 | 0.0 | 1.0 | 0.0 |
| LIGMNPKD_54 | 0.0 | 1.0 | 0.0 |
| LIGMNPKD_55 | 0.0 | 1.0 | 0.0 |
| LIGMNPKD_57 | 0.0 | 1.0 | 0.0 |
| LIGMNPKD_58 | 0.0 | 1.0 | 0.0 |
| LIGMNPKD_59 | 0.0 | 1.0 | 0.0 |
| LIGMNPKD_60 | 0.0 | 1.0 | 0.0 |
| LIGMNPKD_61 | 0.0 | 1.0 | 0.0 |
| LIGMNPKD_62 | 0.0 | 1.0 | 0.0 |
| LIGMNPKD_63 | 0.0 | 1.0 | 0.0 |
| LIGMNPKD_64 | 0.0 | 1.0 | 0.0 |
| LIGMNPKD_65 | 0.0 | 1.0 | 0.0 |
| LIGMNPKD_66 | 0.0 | 1.0 | 0.0 |
| LIGMNPKD_67 | 0.0 | 1.0 | 0.0 |
| LIGMNPKD_70 | 0.0 | 1.0 | 0.0 |
| LIGMNPKD_71 | 1.0 | 0.0 | 1.0 |
| LIGMNPKD_72 | 0.0 | 1.0 | 0.0 |
| LIGMNPKD_73 | 0.0 | 1.0 | 0.0 |
| LIGMNPKD_74 | 1.0 | 0.0 | 1.0 |
| LIGMNPKD_75 | 0.0 | 1.0 | 0.0 |
| LIGMNPKD_76 | 0.0 | 1.0 | 0.0 |
| LIGMNPKD_77 | 0.0 | 1.0 | 0.0 |
| LIGMNPKD_78 | 0.0 | 1.0 | 0.0 |
| LIGMNPKD_79 | 0.0 | 1.0 | 0.0 |
| LIGMNPKD_81 | 0.0 | 1.0 | 0.0 |
| LIGMNPKD_87 | 1.0 | 0.0 | 1.0 |
| LIGMNPKD_89 | 0.0 | 1.0 | 0.0 |
| LIGMNPKD_91 | 0.0 | 1.0 | 0.0 |
| LIGMNPKD_94 | 0.0 | 1.0 | 0.0 |
| LIGMNPKD_96 | 0.0 | 1.0 | 0.0 |
| LIGMNPKD_97 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LIGMNPKD_2 | 42997 | 50682 | False | Siphoviridae | VOG2090, VOG11075, VOG0585, VOG3304, VOG0010, VOG4602 |
| LIGMNPKD_15 | 598 | 20140 | False | Siphoviridae | VOG3654, VOG2624, VOG4545, VOG4582, VOG3651, VOG4557, VOG4621, VOG1159, VOG3409, VOG1581, VOG0880, VOG4553, VOG4555, VOG4576, VOG0720, VOG4544, VOG1574, VOG0183, VOG1422, VOG9852 |
| LIGMNPKD_27 | 18648 | 26932 | False | Siphoviridae | VOG5782, VOG0943, VOG2538, VOG2038, VOG4841, VOG9852, VOG2560, VOG5101 |
Phigaro v2.4.0 (Database: Jan. 2024 release)