Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GBHLCKFK_7 | 63986 | 67669 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 91.22 | 103.46 | NC_008618.1 |
| GBHLCKFK_4 | 19819 | 23145 | Bifidobacterium bifidum ileS conferring resistance to mupirocin | ARO:3003730 | Bbif_ileS_MUP | 99.37 | 100.09 | CP001840.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GBHLCKFK_1 | 0.0 | 1.0 | 0.0 |
| GBHLCKFK_2 | 0.0 | 1.0 | 0.0 |
| GBHLCKFK_3 | 0.0 | 1.0 | 0.0 |
| GBHLCKFK_4 | 0.0 | 1.0 | 0.0 |
| GBHLCKFK_5 | 0.0 | 1.0 | 0.0 |
| GBHLCKFK_6 | 0.0 | 1.0 | 0.0 |
| GBHLCKFK_7 | 0.0 | 1.0 | 0.0 |
| GBHLCKFK_8 | 0.0 | 1.0 | 0.0 |
| GBHLCKFK_9 | 0.0 | 1.0 | 0.0 |
| GBHLCKFK_10 | 0.0 | 1.0 | 0.0 |
| GBHLCKFK_11 | 0.0 | 1.0 | 0.0 |
| GBHLCKFK_12 | 0.0 | 1.0 | 0.0 |
| GBHLCKFK_13 | 0.0 | 1.0 | 0.0 |
| GBHLCKFK_14 | 0.0 | 1.0 | 0.0 |
| GBHLCKFK_15 | 0.0 | 1.0 | 0.0 |
| GBHLCKFK_16 | 0.0 | 1.0 | 0.0 |
| GBHLCKFK_17 | 0.0 | 1.0 | 0.0 |
| GBHLCKFK_18 | 0.0 | 1.0 | 0.0 |
| GBHLCKFK_19 | 0.0 | 1.0 | 0.0 |
| GBHLCKFK_20 | 0.0 | 1.0 | 0.0 |
| GBHLCKFK_21 | 0.0 | 1.0 | 0.0 |
| GBHLCKFK_22 | 0.0 | 1.0 | 0.0 |
| GBHLCKFK_23 | 0.0 | 1.0 | 0.0 |
| GBHLCKFK_24 | 0.0 | 1.0 | 0.0 |
| GBHLCKFK_25 | 0.0 | 1.0 | 0.0 |
| GBHLCKFK_26 | 0.0 | 1.0 | 0.0 |
| GBHLCKFK_27 | 0.0 | 1.0 | 0.0 |
| GBHLCKFK_28 | 0.0 | 1.0 | 0.0 |
| GBHLCKFK_29 | 0.0 | 1.0 | 0.0 |
| GBHLCKFK_30 | 0.0 | 1.0 | 0.0 |
| GBHLCKFK_31 | 0.0 | 1.0 | 0.0 |
| GBHLCKFK_32 | 0.0 | 1.0 | 0.0 |
| GBHLCKFK_33 | 0.0 | 1.0 | 0.0 |
| GBHLCKFK_34 | 0.0 | 1.0 | 0.0 |
| GBHLCKFK_35 | 1.0 | 0.0 | 1.0 |
| GBHLCKFK_36 | 0.0 | 1.0 | 0.0 |
| GBHLCKFK_37 | 0.0 | 1.0 | 0.0 |
| GBHLCKFK_40 | 1.0 | 0.0 | 1.0 |
| GBHLCKFK_41 | 0.0 | 1.0 | 0.0 |
| GBHLCKFK_42 | 1.0 | 0.0 | 1.0 |
| GBHLCKFK_45 | 0.0 | 1.0 | 0.0 |
| GBHLCKFK_46 | 0.0 | 1.0 | 0.0 |
| GBHLCKFK_49 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GBHLCKFK_10 | 29814 | 34361 | False | Siphoviridae | VOG4602, VOG0010, VOG3304, VOG0585 |
| GBHLCKFK_19 | 2106 | 23309 | False | Siphoviridae | VOG0991, VOG0275, VOG3654, VOG4545, VOG4582, VOG3651, VOG4557, VOG4621, VOG1159, VOG3409, VOG1581, VOG0880, VOG4553, VOG4555, VOG4576, VOG0720, VOG4544, VOG1574, VOG0183, VOG1422, VOG9852, VOG2038 |
| GBHLCKFK_23 | 39209 | 41963 | False | Unknown | VOG7103 |
| GBHLCKFK_23 | 49692 | 58111 | False | Siphoviridae | VOG9444, VOG0189, VOG0944, VOG0731, VOG6371, VOG2021 |
Phigaro v2.4.0 (Database: Jan. 2024 release)