Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LDHBPFPI_47 | 40434 | 43760 | Bifidobacterium bifidum ileS conferring resistance to mupirocin | ARO:3003730 | Bbif_ileS_MUP | 99.37 | 100.09 | CP001840.1 |
| LDHBPFPI_49 | 21529 | 25161 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 91.22 | 102.02 | NC_008618.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LDHBPFPI_1 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_2 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_3 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_4 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_5 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_6 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_7 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_8 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_9 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_10 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_11 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_12 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_13 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_14 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_15 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_16 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_17 | 1.0 | 0.0 | 1.0 |
| LDHBPFPI_18 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_19 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_20 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_21 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_22 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_23 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_24 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_25 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_26 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_27 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_28 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_29 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_30 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_31 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_32 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_33 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_34 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_35 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_36 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_37 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_38 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_39 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_40 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_41 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_42 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_43 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_44 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_45 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_47 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_48 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_49 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_50 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_51 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_52 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_53 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_54 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_55 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_56 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_57 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_58 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_59 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_61 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_62 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_63 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_64 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_65 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_66 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_67 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_68 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_69 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_70 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_71 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_72 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_73 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_74 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_75 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_76 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_77 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_78 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_79 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_80 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_81 | 1.0 | 0.0 | 1.0 |
| LDHBPFPI_82 | 1.0 | 0.0 | 1.0 |
| LDHBPFPI_83 | 1.0 | 0.0 | 1.0 |
| LDHBPFPI_84 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_85 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_86 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_87 | 1.0 | 0.0 | 1.0 |
| LDHBPFPI_88 | 1.0 | 0.0 | 1.0 |
| LDHBPFPI_89 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_90 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_91 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_92 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_93 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_94 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_95 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_96 | 1.0 | 0.0 | 1.0 |
| LDHBPFPI_97 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_98 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_100 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_101 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_102 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_103 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_104 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_106 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_107 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_108 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_109 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_110 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_111 | 1.0 | 0.0 | 1.0 |
| LDHBPFPI_112 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_115 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_116 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_119 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_122 | 1.0 | 0.0 | 1.0 |
| LDHBPFPI_123 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_129 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_130 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_131 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_132 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_137 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_139 | 1.0 | 0.0 | 1.0 |
| LDHBPFPI_140 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_141 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_142 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_143 | 0.0 | 1.0 | 0.0 |
| LDHBPFPI_144 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LDHBPFPI_15 | 8430 | 12977 | False | Siphoviridae | VOG4602, VOG0010, VOG3304, VOG0585 |
| LDHBPFPI_58 | 2133 | 20712 | False | Siphoviridae | VOG0991, VOG0275, VOG3654, VOG4545, VOG4582, VOG3651, VOG4557, VOG4621, VOG1159, VOG3409, VOG1581, VOG0880, VOG4553, VOG4555, VOG4576, VOG0720, VOG4544, VOG1574, VOG0183 |
Phigaro v2.4.0 (Database: Jan. 2024 release)