Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| OIEDEGPM_37 | 138444 | 137740 | WalR | 2.07e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| OIEDEGPM_10 | 28995 | 28798 | CspR | 2.60e-33 | cold shock protein | 87.88 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OIEDEGPM_1 | 0.0 | 1.0 | 0.0 |
| OIEDEGPM_2 | 0.0 | 1.0 | 0.0 |
| OIEDEGPM_3 | 0.0 | 1.0 | 0.0 |
| OIEDEGPM_4 | 0.0 | 1.0 | 0.0 |
| OIEDEGPM_5 | 0.0 | 1.0 | 0.0 |
| OIEDEGPM_6 | 0.0 | 1.0 | 0.0 |
| OIEDEGPM_7 | 0.0 | 1.0 | 0.0 |
| OIEDEGPM_8 | 0.0 | 1.0 | 0.0 |
| OIEDEGPM_9 | 0.0 | 1.0 | 0.0 |
| OIEDEGPM_10 | 0.0 | 1.0 | 0.0 |
| OIEDEGPM_11 | 0.0 | 1.0 | 0.0 |
| OIEDEGPM_12 | 0.0 | 1.0 | 0.0 |
| OIEDEGPM_13 | 0.0 | 1.0 | 0.0 |
| OIEDEGPM_14 | 0.0 | 1.0 | 0.0 |
| OIEDEGPM_15 | 1.0 | 0.0 | 1.0 |
| OIEDEGPM_16 | 0.0 | 1.0 | 0.0 |
| OIEDEGPM_17 | 0.0 | 1.0 | 0.0 |
| OIEDEGPM_18 | 0.0 | 1.0 | 0.0 |
| OIEDEGPM_19 | 0.0 | 1.0 | 0.0 |
| OIEDEGPM_20 | 0.0 | 1.0 | 0.0 |
| OIEDEGPM_21 | 0.0 | 1.0 | 0.0 |
| OIEDEGPM_22 | 0.0 | 1.0 | 0.0 |
| OIEDEGPM_23 | 1.0 | 0.0 | 1.0 |
| OIEDEGPM_24 | 1.0 | 0.0 | 1.0 |
| OIEDEGPM_25 | 1.0 | 0.0 | 1.0 |
| OIEDEGPM_26 | 1.0 | 0.0 | 1.0 |
| OIEDEGPM_27 | 1.0 | 0.0 | 1.0 |
| OIEDEGPM_28 | 1.0 | 0.0 | 1.0 |
| OIEDEGPM_29 | 1.0 | 0.0 | 1.0 |
| OIEDEGPM_32 | 0.0 | 1.0 | 0.0 |
| OIEDEGPM_33 | 0.0 | 1.0 | 0.0 |
| OIEDEGPM_34 | 0.0 | 1.0 | 0.0 |
| OIEDEGPM_35 | 0.0 | 1.0 | 0.0 |
| OIEDEGPM_36 | 0.0 | 1.0 | 0.0 |
| OIEDEGPM_37 | 0.0 | 1.0 | 0.0 |
| OIEDEGPM_38 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OIEDEGPM_32 | 5200 | 42802 | False | Siphoviridae | VOG6495, VOG4552, VOG4552, VOG3711, VOG3459, VOG0181, VOG10867, VOG4967, VOG3642, VOG0321, VOG0322, VOG0226, VOG4799, VOG0025, VOG7735, VOG4693, VOG4813, VOG9759, VOG2820, VOG3643, VOG3643, VOG0044, VOG0198, VOG4549, VOG1345, VOG4841, VOG4581, VOG4544, VOG3644, VOG4556, VOG4568, VOG4553, VOG5601, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG2225, VOG4605, VOG4599, VOG4705, VOG7888, VOG0054, VOG4918 |
| OIEDEGPM_32 | 212171 | 223427 | False | Siphoviridae | VOG4632, VOG4609, VOG4581, VOG4544, VOG5051, VOG4556, VOG4568, VOG0204, VOG4589 |
Phigaro v2.4.0 (Database: Jan. 2024 release)