Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PLAAOHPA_68 | 18037 | 18231 | CspA | 5.96e-29 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| PLAAOHPA_35 | 32382 | 33363 | repUS67 | 987 / 1039 | 89.46 | CP006012 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PLAAOHPA_1 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_2 | 1.0 | 0.0 | 1.0 |
| PLAAOHPA_3 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_4 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_6 | 1.0 | 0.0 | 1.0 |
| PLAAOHPA_7 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_8 | 1.0 | 0.0 | 1.0 |
| PLAAOHPA_9 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_10 | 1.0 | 0.0 | 1.0 |
| PLAAOHPA_11 | 1.0 | 0.0 | 1.0 |
| PLAAOHPA_12 | 1.0 | 0.0 | 1.0 |
| PLAAOHPA_13 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_14 | 1.0 | 0.0 | 1.0 |
| PLAAOHPA_15 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_16 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_17 | 1.0 | 0.0 | 1.0 |
| PLAAOHPA_19 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_20 | 1.0 | 0.0 | 1.0 |
| PLAAOHPA_21 | 1.0 | 0.0 | 1.0 |
| PLAAOHPA_23 | 1.0 | 0.0 | 1.0 |
| PLAAOHPA_24 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_25 | 1.0 | 0.0 | 1.0 |
| PLAAOHPA_26 | 1.0 | 0.0 | 1.0 |
| PLAAOHPA_27 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_29 | 1.0 | 0.0 | 1.0 |
| PLAAOHPA_32 | 1.0 | 0.0 | 1.0 |
| PLAAOHPA_33 | 1.0 | 0.0 | 1.0 |
| PLAAOHPA_35 | 1.0 | 0.0 | 1.0 |
| PLAAOHPA_46 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_57 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_68 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_79 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_90 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_101 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_107 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_108 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_109 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_110 | 1.0 | 0.0 | 1.0 |
| PLAAOHPA_111 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_112 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_113 | 1.0 | 0.0 | 1.0 |
| PLAAOHPA_114 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_115 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_116 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_117 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_118 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_119 | 1.0 | 0.0 | 1.0 |
| PLAAOHPA_120 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_121 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_122 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_123 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_124 | 1.0 | 0.0 | 1.0 |
| PLAAOHPA_125 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_126 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_127 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_128 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_129 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_130 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_131 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_132 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_133 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_134 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_135 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_136 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_137 | 1.0 | 0.0 | 1.0 |
| PLAAOHPA_138 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_139 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_140 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_141 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_142 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_143 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_144 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_145 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_146 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_147 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_148 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_149 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_150 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_151 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_152 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_153 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_154 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_155 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_156 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_157 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_158 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_159 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_160 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_161 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_162 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_163 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_164 | 1.0 | 0.0 | 1.0 |
| PLAAOHPA_165 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_166 | 1.0 | 0.0 | 1.0 |
| PLAAOHPA_167 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_168 | 1.0 | 0.0 | 1.0 |
| PLAAOHPA_169 | 1.0 | 0.0 | 1.0 |
| PLAAOHPA_170 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_171 | 1.0 | 0.0 | 1.0 |
| PLAAOHPA_172 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_173 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_174 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_175 | 1.0 | 0.0 | 1.0 |
| PLAAOHPA_176 | 1.0 | 0.0 | 1.0 |
| PLAAOHPA_177 | 1.0 | 0.0 | 1.0 |
| PLAAOHPA_178 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_179 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_180 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_181 | 1.0 | 0.0 | 1.0 |
| PLAAOHPA_182 | 1.0 | 0.0 | 1.0 |
| PLAAOHPA_183 | 1.0 | 0.0 | 1.0 |
| PLAAOHPA_184 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_185 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_186 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_187 | 1.0 | 0.0 | 1.0 |
| PLAAOHPA_188 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_189 | 1.0 | 0.0 | 1.0 |
| PLAAOHPA_190 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_191 | 0.0 | 1.0 | 0.0 |
| PLAAOHPA_192 | 1.0 | 0.0 | 1.0 |
| PLAAOHPA_193 | 1.0 | 0.0 | 1.0 |
| PLAAOHPA_194 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PLAAOHPA_1 | 3546 | 11083 | False | Siphoviridae | VOG4602, VOG8520, VOG2124, VOG1564, VOG9469, VOG0707, VOG3478, VOG5692, VOG4955, VOG0226, VOG0514, VOG4799 |
| PLAAOHPA_1 | 33950 | 61462 | False | Siphoviridae | VOG0866, VOG4841, VOG4581, VOG4544, VOG1345, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG4545, VOG0801, VOG3462, VOG5560, VOG8438, VOG1505, VOG4705, VOG3561, VOG1637, VOG0703, VOG4824 |
| PLAAOHPA_13 | 28029 | 54306 | False | Siphoviridae | VOG8294, VOG0703, VOG8917, VOG0648, VOG9888, VOG10608, VOG1335, VOG6163, VOG1334, VOG1333, VOG4634, VOG0704, VOG1900, VOG1330, VOG4713, VOG1887, VOG3434, VOG4555, VOG4564, VOG7038, VOG0720, VOG4544 |
| PLAAOHPA_24 | 15918 | 47107 | False | Siphoviridae | VOG9667, VOG0275, VOG7188, VOG0918, VOG4615, VOG0703, VOG8917, VOG2021, VOG4705, VOG1505, VOG4856, VOG4904, VOG3463, VOG4619, VOG0801, VOG4545, VOG0701, VOG9763, VOG0698, VOG0697, VOG0696, VOG0695, VOG4572, VOG4555, VOG0692, VOG0691, VOG5821, VOG4544 |
| PLAAOHPA_35 | 36291 | 44220 | False | Unknown | VOG5722, VOG4544, VOG5721, VOG6031, VOG6524, VOG6246 |
| PLAAOHPA_110 | 2999 | 28430 | False | Siphoviridae | VOG10593, VOG2621, VOG4687, VOG4910, VOG4633, VOG4545, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1319, VOG4555, VOG7533, VOG4564, VOG0720, VOG10227, VOG0796, VOG0198, VOG3307, VOG6995, VOG7043, VOG1183, VOG6495, VOG0327, VOG4609 |
| PLAAOHPA_118 | 83537 | 90916 | False | Unknown | VOG0275, VOG3361, VOG0862, VOG8520, VOG8520, VOG1564, VOG9469, VOG4552, VOG8426, VOG2228 |
Phigaro v2.4.0 (Database: Jan. 2024 release)