Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| KPEDINOL_73 | 18037 | 18231 | CspA | 4.73e-29 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| KPEDINOL_76 | 46584 | 47573 | repUS67 | 1006 / 1039 | 87.77 | CP006012 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KPEDINOL_1 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_2 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_3 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_4 | 1.0 | 0.0 | 1.0 |
| KPEDINOL_5 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_6 | 1.0 | 0.0 | 1.0 |
| KPEDINOL_7 | 1.0 | 0.0 | 1.0 |
| KPEDINOL_8 | 1.0 | 0.0 | 1.0 |
| KPEDINOL_9 | 1.0 | 0.0 | 1.0 |
| KPEDINOL_10 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_13 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_14 | 1.0 | 0.0 | 1.0 |
| KPEDINOL_15 | 1.0 | 0.0 | 1.0 |
| KPEDINOL_24 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_35 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_46 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_57 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_68 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_73 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_74 | 1.0 | 0.0 | 1.0 |
| KPEDINOL_75 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_76 | 1.0 | 0.0 | 1.0 |
| KPEDINOL_77 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_78 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_79 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_80 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_81 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_82 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_83 | 1.0 | 0.0 | 1.0 |
| KPEDINOL_84 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_85 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_86 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_87 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_88 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_89 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_90 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_91 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_92 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_93 | 1.0 | 0.0 | 1.0 |
| KPEDINOL_94 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_95 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_96 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_97 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_98 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_99 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_100 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_101 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_102 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_103 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_104 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_105 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_106 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_107 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_108 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_109 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_110 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_111 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_112 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_113 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_114 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_115 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_116 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_117 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_118 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_119 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_120 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_121 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_122 | 1.0 | 0.0 | 1.0 |
| KPEDINOL_123 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_124 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_125 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_126 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_127 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_128 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_129 | 1.0 | 0.0 | 1.0 |
| KPEDINOL_130 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_131 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_132 | 1.0 | 0.0 | 1.0 |
| KPEDINOL_133 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_134 | 1.0 | 0.0 | 1.0 |
| KPEDINOL_135 | 1.0 | 0.0 | 1.0 |
| KPEDINOL_136 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_137 | 1.0 | 0.0 | 1.0 |
| KPEDINOL_138 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_139 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_140 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_141 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_142 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_143 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_144 | 1.0 | 0.0 | 1.0 |
| KPEDINOL_145 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_146 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_147 | 1.0 | 0.0 | 1.0 |
| KPEDINOL_148 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_149 | 1.0 | 0.0 | 1.0 |
| KPEDINOL_150 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_151 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_152 | 1.0 | 0.0 | 1.0 |
| KPEDINOL_153 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_154 | 1.0 | 0.0 | 1.0 |
| KPEDINOL_155 | 1.0 | 0.0 | 1.0 |
| KPEDINOL_156 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_157 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_159 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_160 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_161 | 1.0 | 0.0 | 1.0 |
| KPEDINOL_162 | 0.0 | 1.0 | 0.0 |
| KPEDINOL_163 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| KPEDINOL_1 | 3546 | 11083 | False | Siphoviridae | VOG4602, VOG8520, VOG2124, VOG1564, VOG9469, VOG0707, VOG3478, VOG5692, VOG4955, VOG0226, VOG0514, VOG4799 |
| KPEDINOL_1 | 33950 | 61462 | False | Siphoviridae | VOG0866, VOG4841, VOG4581, VOG4544, VOG1345, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG4545, VOG0801, VOG3462, VOG5560, VOG8438, VOG1505, VOG4705, VOG3561, VOG1637, VOG0703, VOG4824 |
| KPEDINOL_74 | 2999 | 28430 | False | Siphoviridae | VOG10593, VOG2621, VOG4687, VOG4910, VOG4633, VOG4545, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1319, VOG4555, VOG7533, VOG4564, VOG0720, VOG10227, VOG0796, VOG0198, VOG3307, VOG6995, VOG7043, VOG1183, VOG6495, VOG0327, VOG4609 |
| KPEDINOL_76 | 22952 | 40892 | False | Unknown | VOG0054, VOG0753, VOG0648, VOG9226, VOG10609, VOG6540, VOG5534, VOG7628, VOG7629, VOG6036, VOG6941, VOG6246, VOG6524, VOG6031 |
| KPEDINOL_76 | 75499 | 95600 | False | Siphoviridae | VOG1026, VOG4570, VOG7627, VOG0025, VOG0377, VOG1026, VOG2451, VOG4593, VOG1344, VOG4549, VOG9060, VOG5821, VOG0787, VOG1638 |
| KPEDINOL_83 | 917 | 23674 | False | Siphoviridae | VOG0648, VOG9888, VOG10608, VOG1335, VOG6163, VOG1334, VOG1333, VOG4634, VOG0704, VOG1900, VOG1330, VOG4713, VOG1887, VOG3434, VOG4555, VOG4564, VOG7038, VOG0720, VOG4544 |
| KPEDINOL_84 | 2302 | 22976 | False | Siphoviridae | VOG0944, VOG4544, VOG5821, VOG0691, VOG0692, VOG4555, VOG4572, VOG0695, VOG0696, VOG0697, VOG0698, VOG9763, VOG0701, VOG4545, VOG0801, VOG4619, VOG3463, VOG4904, VOG4856 |
| KPEDINOL_109 | 83537 | 90916 | False | Unknown | VOG0275, VOG3361, VOG0862, VOG8520, VOG8520, VOG1564, VOG9469, VOG4552, VOG8426, VOG2228 |
Phigaro v2.4.0 (Database: Jan. 2024 release)