Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PGDMBGGM_146 | 6061 | 5867 | CspA | 3.49e-29 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| PGDMBGGM_142 | 18958 | 19993 | repUS67 | 1053 / 1039 | 86.51 | CP006012 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PGDMBGGM_1 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_2 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_3 | 1.0 | 0.0 | 1.0 |
| PGDMBGGM_4 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_5 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_6 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_7 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_8 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_9 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_10 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_11 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_12 | 1.0 | 0.0 | 1.0 |
| PGDMBGGM_13 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_14 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_15 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_16 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_17 | 1.0 | 0.0 | 1.0 |
| PGDMBGGM_18 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_19 | 1.0 | 0.0 | 1.0 |
| PGDMBGGM_20 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_21 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_22 | 1.0 | 0.0 | 1.0 |
| PGDMBGGM_23 | 1.0 | 0.0 | 1.0 |
| PGDMBGGM_24 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_25 | 1.0 | 0.0 | 1.0 |
| PGDMBGGM_26 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_27 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_28 | 1.0 | 0.0 | 1.0 |
| PGDMBGGM_29 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_30 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_31 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_32 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_33 | 1.0 | 0.0 | 1.0 |
| PGDMBGGM_34 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_35 | 1.0 | 0.0 | 1.0 |
| PGDMBGGM_36 | 1.0 | 0.0 | 1.0 |
| PGDMBGGM_38 | 1.0 | 0.0 | 1.0 |
| PGDMBGGM_39 | 1.0 | 0.0 | 1.0 |
| PGDMBGGM_40 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_41 | 1.0 | 0.0 | 1.0 |
| PGDMBGGM_42 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_43 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_44 | 1.0 | 0.0 | 1.0 |
| PGDMBGGM_45 | 1.0 | 0.0 | 1.0 |
| PGDMBGGM_46 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_48 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_49 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_50 | 1.0 | 0.0 | 1.0 |
| PGDMBGGM_51 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_52 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_53 | 1.0 | 0.0 | 1.0 |
| PGDMBGGM_54 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_55 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_56 | 1.0 | 0.0 | 1.0 |
| PGDMBGGM_57 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_58 | 1.0 | 0.0 | 1.0 |
| PGDMBGGM_59 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_60 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_61 | 1.0 | 0.0 | 1.0 |
| PGDMBGGM_62 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_63 | 1.0 | 0.0 | 1.0 |
| PGDMBGGM_64 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_65 | 1.0 | 0.0 | 1.0 |
| PGDMBGGM_66 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_68 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_70 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_71 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_79 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_90 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_101 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_112 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_113 | 1.0 | 0.0 | 1.0 |
| PGDMBGGM_124 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_135 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_142 | 1.0 | 0.0 | 1.0 |
| PGDMBGGM_143 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_144 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_145 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_146 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_147 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_148 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_149 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_150 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_151 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_152 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_153 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_154 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_155 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_156 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_157 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_158 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_159 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_160 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_161 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_162 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_163 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_164 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_165 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_166 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_167 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_168 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_169 | 1.0 | 0.0 | 1.0 |
| PGDMBGGM_170 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_171 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_172 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_173 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_174 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_175 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_176 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_177 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_178 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_179 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_180 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_181 | 1.0 | 0.0 | 1.0 |
| PGDMBGGM_182 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_183 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_184 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_185 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_186 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_187 | 1.0 | 0.0 | 1.0 |
| PGDMBGGM_188 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_189 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_190 | 1.0 | 0.0 | 1.0 |
| PGDMBGGM_191 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_192 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_193 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_194 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_195 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_196 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_197 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_198 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_199 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_200 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_201 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_202 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_203 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_204 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_205 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_206 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_207 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_208 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_209 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_210 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_211 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_212 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_213 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_214 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_215 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_216 | 1.0 | 0.0 | 1.0 |
| PGDMBGGM_217 | 1.0 | 0.0 | 1.0 |
| PGDMBGGM_218 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_219 | 1.0 | 0.0 | 1.0 |
| PGDMBGGM_220 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_221 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_222 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_223 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_224 | 0.0 | 1.0 | 0.0 |
| PGDMBGGM_225 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PGDMBGGM_1 | 2881 | 27620 | False | Siphoviridae | VOG4841, VOG4581, VOG1886, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG0209, VOG4545, VOG0801, VOG3462, VOG10972, VOG0565, VOG9997, VOG4626, VOG4930, VOG1637, VOG0703 |
| PGDMBGGM_215 | 15353 | 40998 | True | Siphoviridae | VOG0052, VOG7438, VOG1047, VOG0021, VOG0026, VOG4606, VOG0327, VOG4548, VOG0198, VOG8909, VOG4581, VOG4571, VOG4544, VOG4556, VOG4573, VOG4553, VOG0204, VOG4589, VOG0641, VOG9502, VOG0221, VOG0221, VOG9671 |
Phigaro v2.4.0 (Database: Jan. 2024 release)