Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GGAAEDIG_157 | 18059 | 18253 | CspA | 4.11e-29 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| GGAAEDIG_49 | 1146 | 1985 | repUS67 | 840 / 1039 | 91.19 | CP006012 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GGAAEDIG_1 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_2 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_3 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_4 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_5 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_6 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_7 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_8 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_9 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_10 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_11 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_12 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_13 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_14 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_15 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_16 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_17 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_18 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_19 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_20 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_21 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_22 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_23 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_24 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_25 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_26 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_27 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_28 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_29 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_30 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_31 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_32 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_33 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_34 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_35 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_36 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_37 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_38 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_40 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_41 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_42 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_43 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_44 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_45 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_46 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_47 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_48 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_49 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_50 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_52 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_53 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_54 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_55 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_56 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_57 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_58 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_59 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_60 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_61 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_62 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_63 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_64 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_65 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_66 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_67 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_68 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_69 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_70 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_71 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_72 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_73 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_74 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_76 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_77 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_78 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_79 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_80 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_81 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_82 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_83 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_84 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_87 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_88 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_90 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_91 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_92 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_93 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_94 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_95 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_96 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_98 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_100 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_101 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_102 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_103 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_106 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_107 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_108 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_112 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_113 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_124 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_135 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_146 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_157 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_168 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_179 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_190 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_201 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_212 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_223 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_224 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_235 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_246 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_257 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_268 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_279 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_290 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_295 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_296 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_297 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_298 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_299 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_300 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_301 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_302 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_303 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_304 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_305 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_306 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_307 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_308 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_309 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_310 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_311 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_312 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_313 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_314 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_315 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_316 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_317 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_318 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_319 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_320 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_321 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_322 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_323 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_324 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_325 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_326 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_327 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_328 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_329 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_330 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_331 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_332 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_333 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_334 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_335 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_336 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_337 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_338 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_339 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_340 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_341 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_342 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_343 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_344 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_345 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_346 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_347 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_348 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_349 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_350 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_351 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_353 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_354 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_355 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_356 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_357 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_358 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_359 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_360 | 0.0 | 1.0 | 0.0 |
| GGAAEDIG_361 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_362 | 1.0 | 0.0 | 1.0 |
| GGAAEDIG_363 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GGAAEDIG_79 | 3074 | 21365 | False | Siphoviridae | VOG0801, VOG6163, VOG9471, VOG2225, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG4553, VOG4568, VOG4556, VOG4544, VOG4581, VOG4841, VOG0866, VOG8637, VOG0198 |
| GGAAEDIG_101 | 5348 | 28672 | False | Siphoviridae | VOG8611, VOG5878, VOG0321, VOG4548, VOG0322, VOG6545, VOG4632, VOG4609, VOG0327, VOG6495, VOG1183, VOG7043, VOG3307, VOG0198, VOG0796, VOG10227, VOG0720, VOG4564, VOG7533, VOG4555, VOG1319, VOG4713, VOG0723, VOG5660, VOG0724, VOG0799, VOG0725, VOG0800, VOG4545 |
| GGAAEDIG_223 | 81668 | 89104 | True | Unknown | VOG5148, VOG5818, VOG0275, VOG0275, VOG3361, VOG0862, VOG8520, VOG8520, VOG1564 |
| GGAAEDIG_298 | 3568 | 11911 | False | Siphoviridae | VOG4602, VOG8520, VOG2124, VOG1564, VOG9469, VOG0707, VOG3478, VOG5692, VOG4955, VOG0226, VOG0514, VOG4799, VOG1183, VOG2388 |
| GGAAEDIG_298 | 33972 | 61487 | False | Siphoviridae | VOG0866, VOG4841, VOG4581, VOG4544, VOG1345, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG4545, VOG0801, VOG3462, VOG5560, VOG8438, VOG1505, VOG4705, VOG3561, VOG1637, VOG0703, VOG4824 |
Phigaro v2.4.0 (Database: Jan. 2024 release)