Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FEACAPKM_1 | 2257554 | 2258774 | tet(40) | ARO:3000567 | tet(40) | 98.52 | 100.00 | AM419751.1 |
| FEACAPKM_1 | 2255486 | 2257405 | tet(O) | ARO:3000190 | tet(O) | 93.43 | 100.00 | M18896.2 |
| FEACAPKM_1 | 99843 | 101762 | tet(W) | ARO:3000194 | tet(W) | 97.50 | 100.00 | AJ222769.3 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| FEACAPKM_1 | 2255486 | 2257405 | tet(O/32/O) | Doxycycline, Tetracycline, Minocycline | 99.69 | 100.00 | AIOQ01000025 |
| FEACAPKM_1 | 2257554 | 2258774 | tet(40) | Doxycycline, Tetracycline | 99.51 | 100.00 | AM419751 |
| FEACAPKM_1 | 99843 | 101762 | tet(W) | Doxycycline, Tetracycline, Minocycline | 99.01 | 100.00 | FN396364 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FEACAPKM_1 | 99846 | 101762 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.84 | 100.00 | WP_033493020.1 |
| FEACAPKM_1 | 2257554 | 2258771 | tet(40) | tetracycline efflux MFS transporter Tet(40) | BLASTX | 98.77 | 100.00 | WP_015573055.1 |
| FEACAPKM_1 | 2255486 | 2257402 | tet(O) | tetracycline resistance ribosomal protection protein Tet(O) | BLASTX | 93.74 | 100.00 | WP_012669445.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| FEACAPKM_1 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| FEACAPKM_1 | 201360 | 213489 | True | Unknown | VOG4606, |
| FEACAPKM_1 | 1647433 | 1665625 | False | Myoviridae | / |
| FEACAPKM_1 | 1871099 | 1877508 | True | Unknown | VOG0221, |
| FEACAPKM_1 | 1947741 | 1959195 | True | Siphoviridae | VOG6495, |
| FEACAPKM_1 | 2362898 | 2366804 | False | Siphoviridae | VOG6495, |
| FEACAPKM_1 | 2863204 | 2870513 | False | Siphoviridae | VOG0052, |
Phigaro v2.4.0 (Database: Jan. 2024 release)