Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 0 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IKPFODNH_66 | 61 | 921 | TEM-116 | ARO:3000979 | TEM-116 | 100.00 | 100.00 | U36911.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| IKPFODNH_66 | 61 | 921 | blaTEM-116 | Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin | 99.88 | 100.00 | AY425988 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IKPFODNH_66 | 64 | 921 | blaTEM-116 | broad-spectrum class A beta-lactamase TEM-116 | ALLELEX | 100.00 | 100.00 | WP_000027050.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| IKPFODNH_69 | 431 | 561 | ColRNAI | 131 / 130 | 87.02 | DQ298019 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IKPFODNH_5 | 0.0 | 1.0 | 0.0 |
| IKPFODNH_8 | 0.0 | 1.0 | 0.0 |
| IKPFODNH_10 | 0.0 | 1.0 | 0.0 |
| IKPFODNH_12 | 0.0 | 1.0 | 0.0 |
| IKPFODNH_13 | 0.0 | 1.0 | 0.0 |
| IKPFODNH_14 | 0.0 | 1.0 | 0.0 |
| IKPFODNH_15 | 0.0 | 1.0 | 0.0 |
| IKPFODNH_16 | 0.0 | 1.0 | 0.0 |
| IKPFODNH_17 | 0.0 | 1.0 | 0.0 |
| IKPFODNH_18 | 0.0 | 1.0 | 0.0 |
| IKPFODNH_19 | 0.0 | 1.0 | 0.0 |
| IKPFODNH_20 | 0.0 | 1.0 | 0.0 |
| IKPFODNH_21 | 0.0 | 1.0 | 0.0 |
| IKPFODNH_22 | 0.0 | 1.0 | 0.0 |
| IKPFODNH_23 | 0.0 | 1.0 | 0.0 |
| IKPFODNH_24 | 0.0 | 1.0 | 0.0 |
| IKPFODNH_25 | 0.0 | 1.0 | 0.0 |
| IKPFODNH_26 | 0.0 | 1.0 | 0.0 |
| IKPFODNH_27 | 1.0 | 0.0 | 1.0 |
| IKPFODNH_28 | 0.0 | 1.0 | 0.0 |
| IKPFODNH_29 | 0.0 | 1.0 | 0.0 |
| IKPFODNH_30 | 0.0 | 1.0 | 0.0 |
| IKPFODNH_31 | 0.0 | 1.0 | 0.0 |
| IKPFODNH_32 | 0.0 | 1.0 | 0.0 |
| IKPFODNH_33 | 0.0 | 1.0 | 0.0 |
| IKPFODNH_34 | 0.0 | 1.0 | 0.0 |
| IKPFODNH_35 | 1.0 | 0.0 | 1.0 |
| IKPFODNH_36 | 0.0 | 1.0 | 0.0 |
| IKPFODNH_37 | 0.0 | 1.0 | 0.0 |
| IKPFODNH_38 | 1.0 | 0.0 | 1.0 |
| IKPFODNH_39 | 0.0 | 1.0 | 0.0 |
| IKPFODNH_40 | 1.0 | 0.0 | 1.0 |
| IKPFODNH_41 | 0.0 | 1.0 | 0.0 |
| IKPFODNH_42 | 0.0 | 1.0 | 0.0 |
| IKPFODNH_43 | 0.0 | 1.0 | 0.0 |
| IKPFODNH_44 | 0.0 | 1.0 | 0.0 |
| IKPFODNH_45 | 0.0 | 1.0 | 0.0 |
| IKPFODNH_46 | 0.0 | 1.0 | 0.0 |
| IKPFODNH_47 | 0.0 | 1.0 | 0.0 |
| IKPFODNH_49 | 0.0 | 1.0 | 0.0 |
| IKPFODNH_50 | 0.0 | 1.0 | 0.0 |
| IKPFODNH_51 | 0.0 | 1.0 | 0.0 |
| IKPFODNH_52 | 0.0 | 1.0 | 0.0 |
| IKPFODNH_53 | 1.0 | 0.0 | 1.0 |
| IKPFODNH_54 | 1.0 | 0.0 | 1.0 |
| IKPFODNH_55 | 1.0 | 0.0 | 1.0 |
| IKPFODNH_57 | 1.0 | 0.0 | 1.0 |
| IKPFODNH_58 | 1.0 | 0.0 | 1.0 |
| IKPFODNH_59 | 1.0 | 0.0 | 1.0 |
| IKPFODNH_60 | 1.0 | 0.0 | 1.0 |
| IKPFODNH_61 | 0.0 | 1.0 | 0.0 |
| IKPFODNH_62 | 0.0 | 1.0 | 0.0 |
| IKPFODNH_63 | 0.0 | 1.0 | 0.0 |
| IKPFODNH_64 | 1.0 | 0.0 | 1.0 |
| IKPFODNH_65 | 0.0 | 1.0 | 0.0 |
| IKPFODNH_66 | 1.0 | 0.0 | 1.0 |
| IKPFODNH_67 | 1.0 | 0.0 | 1.0 |
| IKPFODNH_68 | 1.0 | 0.0 | 1.0 |
| IKPFODNH_70 | 0.0 | 1.0 | 0.0 |
| IKPFODNH_76 | 0.0 | 1.0 | 0.0 |
| IKPFODNH_79 | 0.0 | 1.0 | 0.0 |
| IKPFODNH_83 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| IKPFODNH_19 | 223780 | 236238 | False | Siphoviridae | VOG1145, |
| IKPFODNH_62 | 88766 | 99728 | False | Myoviridae | VOG4573, |
Phigaro v2.4.0 (Database: Jan. 2024 release)