Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| DCGLMANM_1 | 68181 | 68885 | WalR | 2.83e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| DCGLMANM_4 | 46044 | 45850 | CspR | 4.59e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| DCGLMANM_4 | 46044 | 45847 | CspA | 7.05e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| DCGLMANM_15 | 21959 | 23059 | repUS73 | 1101 / 1101 | 94.01 | CP002654 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DCGLMANM_1 | 0.0 | 1.0 | 0.0 |
| DCGLMANM_2 | 0.0 | 1.0 | 0.0 |
| DCGLMANM_3 | 0.0 | 1.0 | 0.0 |
| DCGLMANM_4 | 0.0 | 1.0 | 0.0 |
| DCGLMANM_5 | 0.0 | 1.0 | 0.0 |
| DCGLMANM_6 | 0.0 | 1.0 | 0.0 |
| DCGLMANM_7 | 0.0 | 1.0 | 0.0 |
| DCGLMANM_8 | 0.0 | 1.0 | 0.0 |
| DCGLMANM_9 | 0.0 | 1.0 | 0.0 |
| DCGLMANM_10 | 0.0 | 1.0 | 0.0 |
| DCGLMANM_11 | 0.0 | 1.0 | 0.0 |
| DCGLMANM_12 | 0.0 | 1.0 | 0.0 |
| DCGLMANM_13 | 1.0 | 0.0 | 1.0 |
| DCGLMANM_14 | 0.0 | 1.0 | 0.0 |
| DCGLMANM_15 | 1.0 | 0.0 | 1.0 |
| DCGLMANM_16 | 1.0 | 0.0 | 1.0 |
| DCGLMANM_17 | 0.0 | 1.0 | 0.0 |
| DCGLMANM_18 | 1.0 | 0.0 | 1.0 |
| DCGLMANM_19 | 1.0 | 0.0 | 1.0 |
| DCGLMANM_20 | 0.0 | 1.0 | 0.0 |
| DCGLMANM_21 | 1.0 | 0.0 | 1.0 |
| DCGLMANM_22 | 0.0 | 1.0 | 0.0 |
| DCGLMANM_23 | 0.0 | 1.0 | 0.0 |
| DCGLMANM_25 | 1.0 | 0.0 | 1.0 |
| DCGLMANM_26 | 1.0 | 0.0 | 1.0 |
| DCGLMANM_28 | 1.0 | 0.0 | 1.0 |
| DCGLMANM_29 | 1.0 | 0.0 | 1.0 |
| DCGLMANM_30 | 1.0 | 0.0 | 1.0 |
| DCGLMANM_31 | 1.0 | 0.0 | 1.0 |
| DCGLMANM_34 | 0.0 | 1.0 | 0.0 |
| DCGLMANM_45 | 0.0 | 1.0 | 0.0 |
| DCGLMANM_52 | 0.0 | 1.0 | 0.0 |
| DCGLMANM_53 | 0.0 | 1.0 | 0.0 |
| DCGLMANM_54 | 0.0 | 1.0 | 0.0 |
| DCGLMANM_55 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DCGLMANM_9 | 49033 | 52020 | False | Siphoviridae | VOG10015, VOG9459, VOG0044, VOG0634, VOG1049, VOG0198 |
| DCGLMANM_10 | 1141 | 33263 | False | Siphoviridae | VOG0602, VOG9888, VOG8917, VOG9997, VOG3498, VOG4619, VOG0801, VOG6163, VOG0541, VOG4586, VOG0704, VOG0539, VOG4589, VOG0562, VOG4553, VOG4573, VOG4556, VOG4844, VOG4003, VOG4673, VOG9671, VOG0044, VOG0586, VOG0327, VOG4609, VOG4632, VOG6545, VOG0322, VOG4548, VOG0321 |
| DCGLMANM_12 | 280268 | 290890 | False | Siphoviridae | VOG0205, VOG4841, VOG4581, VOG4544, VOG4556, VOG4568, VOG0204, VOG0198 |
| DCGLMANM_12 | 296877 | 335851 | False | Siphoviridae | VOG4602, VOG9667, VOG11077, VOG11003, VOG6495, VOG0181, VOG7298, VOG1309, VOG0186, VOG6495, VOG5046, VOG0189, VOG4693, VOG3480, VOG5878, VOG0198, VOG9295, VOG0796, VOG4544, VOG0720, VOG4564, VOG10914, VOG3434, VOG1887, VOG4713, VOG1330, VOG0704, VOG4634, VOG1333, VOG1334, VOG4545, VOG1335, VOG10608, VOG3498, VOG8294 |
Phigaro v2.4.0 (Database: Jan. 2024 release)