Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NGHIIICO_190 | 5722 | 6426 | WalR | 8.41e-114 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| NGHIIICO_182 | 13722 | 13919 | CspR | 5.38e-34 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NGHIIICO_1 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_2 | 1.0 | 0.0 | 1.0 |
| NGHIIICO_3 | 1.0 | 0.0 | 1.0 |
| NGHIIICO_4 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_5 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_6 | 1.0 | 0.0 | 1.0 |
| NGHIIICO_7 | 1.0 | 0.0 | 1.0 |
| NGHIIICO_8 | 1.0 | 0.0 | 1.0 |
| NGHIIICO_9 | 1.0 | 0.0 | 1.0 |
| NGHIIICO_10 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_11 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_12 | 1.0 | 0.0 | 1.0 |
| NGHIIICO_13 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_14 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_15 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_16 | 1.0 | 0.0 | 1.0 |
| NGHIIICO_17 | 1.0 | 0.0 | 1.0 |
| NGHIIICO_18 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_19 | 1.0 | 0.0 | 1.0 |
| NGHIIICO_20 | 1.0 | 0.0 | 1.0 |
| NGHIIICO_21 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_22 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_23 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_24 | 1.0 | 0.0 | 1.0 |
| NGHIIICO_25 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_26 | 1.0 | 0.0 | 1.0 |
| NGHIIICO_27 | 1.0 | 0.0 | 1.0 |
| NGHIIICO_28 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_29 | 1.0 | 0.0 | 1.0 |
| NGHIIICO_30 | 1.0 | 0.0 | 1.0 |
| NGHIIICO_31 | 1.0 | 0.0 | 1.0 |
| NGHIIICO_32 | 1.0 | 0.0 | 1.0 |
| NGHIIICO_33 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_34 | 1.0 | 0.0 | 1.0 |
| NGHIIICO_35 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_36 | 1.0 | 0.0 | 1.0 |
| NGHIIICO_38 | 1.0 | 0.0 | 1.0 |
| NGHIIICO_39 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_40 | 1.0 | 0.0 | 1.0 |
| NGHIIICO_41 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_42 | 1.0 | 0.0 | 1.0 |
| NGHIIICO_43 | 1.0 | 0.0 | 1.0 |
| NGHIIICO_44 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_45 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_46 | 1.0 | 0.0 | 1.0 |
| NGHIIICO_47 | 1.0 | 0.0 | 1.0 |
| NGHIIICO_48 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_49 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_50 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_51 | 1.0 | 0.0 | 1.0 |
| NGHIIICO_52 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_53 | 1.0 | 0.0 | 1.0 |
| NGHIIICO_54 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_55 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_56 | 1.0 | 0.0 | 1.0 |
| NGHIIICO_57 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_58 | 1.0 | 0.0 | 1.0 |
| NGHIIICO_59 | 1.0 | 0.0 | 1.0 |
| NGHIIICO_60 | 1.0 | 0.0 | 1.0 |
| NGHIIICO_61 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_62 | 1.0 | 0.0 | 1.0 |
| NGHIIICO_63 | 1.0 | 0.0 | 1.0 |
| NGHIIICO_64 | 1.0 | 0.0 | 1.0 |
| NGHIIICO_65 | 1.0 | 0.0 | 1.0 |
| NGHIIICO_66 | 1.0 | 0.0 | 1.0 |
| NGHIIICO_67 | 1.0 | 0.0 | 1.0 |
| NGHIIICO_68 | 1.0 | 0.0 | 1.0 |
| NGHIIICO_70 | 1.0 | 0.0 | 1.0 |
| NGHIIICO_71 | 1.0 | 0.0 | 1.0 |
| NGHIIICO_72 | 1.0 | 0.0 | 1.0 |
| NGHIIICO_73 | 1.0 | 0.0 | 1.0 |
| NGHIIICO_74 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_75 | 1.0 | 0.0 | 1.0 |
| NGHIIICO_76 | 1.0 | 0.0 | 1.0 |
| NGHIIICO_77 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_78 | 1.0 | 0.0 | 1.0 |
| NGHIIICO_80 | 1.0 | 0.0 | 1.0 |
| NGHIIICO_81 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_82 | 1.0 | 0.0 | 1.0 |
| NGHIIICO_83 | 1.0 | 0.0 | 1.0 |
| NGHIIICO_84 | 1.0 | 0.0 | 1.0 |
| NGHIIICO_85 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_86 | 1.0 | 0.0 | 1.0 |
| NGHIIICO_87 | 1.0 | 0.0 | 1.0 |
| NGHIIICO_88 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_89 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_90 | 1.0 | 0.0 | 1.0 |
| NGHIIICO_91 | 1.0 | 0.0 | 1.0 |
| NGHIIICO_92 | 1.0 | 0.0 | 1.0 |
| NGHIIICO_93 | 1.0 | 0.0 | 1.0 |
| NGHIIICO_94 | 1.0 | 0.0 | 1.0 |
| NGHIIICO_95 | 1.0 | 0.0 | 1.0 |
| NGHIIICO_97 | 1.0 | 0.0 | 1.0 |
| NGHIIICO_98 | 1.0 | 0.0 | 1.0 |
| NGHIIICO_99 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_100 | 1.0 | 0.0 | 1.0 |
| NGHIIICO_101 | 1.0 | 0.0 | 1.0 |
| NGHIIICO_102 | 1.0 | 0.0 | 1.0 |
| NGHIIICO_103 | 1.0 | 0.0 | 1.0 |
| NGHIIICO_104 | 1.0 | 0.0 | 1.0 |
| NGHIIICO_110 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_111 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_122 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_133 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_137 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_138 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_139 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_140 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_141 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_142 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_143 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_144 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_145 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_146 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_147 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_148 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_149 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_150 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_151 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_152 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_153 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_154 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_155 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_156 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_157 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_158 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_159 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_160 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_161 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_162 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_163 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_164 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_165 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_166 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_167 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_168 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_169 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_170 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_171 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_172 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_173 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_174 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_175 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_176 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_177 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_178 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_179 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_180 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_181 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_182 | 1.0 | 0.0 | 1.0 |
| NGHIIICO_183 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_184 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_185 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_186 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_187 | 1.0 | 0.0 | 1.0 |
| NGHIIICO_188 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_189 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_190 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_191 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_192 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_193 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_194 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_195 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_196 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_197 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_198 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_199 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_200 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_201 | 1.0 | 0.0 | 1.0 |
| NGHIIICO_202 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_203 | 1.0 | 0.0 | 1.0 |
| NGHIIICO_204 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_205 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_206 | 1.0 | 0.0 | 1.0 |
| NGHIIICO_207 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_208 | 1.0 | 0.0 | 1.0 |
| NGHIIICO_209 | 1.0 | 0.0 | 1.0 |
| NGHIIICO_210 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_211 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_212 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_213 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_214 | 1.0 | 0.0 | 1.0 |
| NGHIIICO_215 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_216 | 1.0 | 0.0 | 1.0 |
| NGHIIICO_217 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_218 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_219 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_220 | 1.0 | 0.0 | 1.0 |
| NGHIIICO_221 | 0.0 | 1.0 | 0.0 |
| NGHIIICO_222 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NGHIIICO_137 | 4802 | 11316 | False | Siphoviridae | VOG9140, VOG3643, VOG0152, VOG9759, VOG4693, VOG7735, VOG0025, VOG4799 |
| NGHIIICO_156 | 82255 | 103241 | False | Siphoviridae | VOG4918, VOG0703, VOG1637, VOG7896, VOG6455, VOG4599, VOG4605, VOG6163, VOG5852, VOG4586, VOG0704, VOG0539, VOG4589, VOG0562, VOG4553, VOG4573, VOG4556, VOG4844, VOG4841, VOG4549 |
Phigaro v2.4.0 (Database: Jan. 2024 release)