Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| BMEKLBHD_55 | 11967 | 12668 | WalR | 2.88e-109 | transcriptional regulatory protein | 80.34 | 99.57 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| BMEKLBHD_93 | 896 | 1825 | rep28 | 930 / 930 | 98.60 | CP003162 |
| BMEKLBHD_105 | 2196 | 3151 | repUS64 | 959 / 954 | 81.13 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| BMEKLBHD_1 | 1.0 | 0.0 | 1.0 |
| BMEKLBHD_2 | 1.0 | 0.0 | 1.0 |
| BMEKLBHD_3 | 1.0 | 0.0 | 1.0 |
| BMEKLBHD_4 | 0.0 | 1.0 | 0.0 |
| BMEKLBHD_5 | 1.0 | 0.0 | 1.0 |
| BMEKLBHD_6 | 0.0 | 1.0 | 0.0 |
| BMEKLBHD_7 | 1.0 | 0.0 | 1.0 |
| BMEKLBHD_8 | 1.0 | 0.0 | 1.0 |
| BMEKLBHD_9 | 1.0 | 0.0 | 1.0 |
| BMEKLBHD_10 | 1.0 | 0.0 | 1.0 |
| BMEKLBHD_11 | 0.0 | 1.0 | 0.0 |
| BMEKLBHD_22 | 0.0 | 1.0 | 0.0 |
| BMEKLBHD_26 | 0.0 | 1.0 | 0.0 |
| BMEKLBHD_27 | 0.0 | 1.0 | 0.0 |
| BMEKLBHD_28 | 0.0 | 1.0 | 0.0 |
| BMEKLBHD_29 | 0.0 | 1.0 | 0.0 |
| BMEKLBHD_30 | 0.0 | 1.0 | 0.0 |
| BMEKLBHD_31 | 0.0 | 1.0 | 0.0 |
| BMEKLBHD_32 | 0.0 | 1.0 | 0.0 |
| BMEKLBHD_33 | 0.0 | 1.0 | 0.0 |
| BMEKLBHD_34 | 0.0 | 1.0 | 0.0 |
| BMEKLBHD_35 | 1.0 | 0.0 | 1.0 |
| BMEKLBHD_36 | 0.0 | 1.0 | 0.0 |
| BMEKLBHD_37 | 0.0 | 1.0 | 0.0 |
| BMEKLBHD_38 | 0.0 | 1.0 | 0.0 |
| BMEKLBHD_39 | 0.0 | 1.0 | 0.0 |
| BMEKLBHD_40 | 0.0 | 1.0 | 0.0 |
| BMEKLBHD_41 | 0.0 | 1.0 | 0.0 |
| BMEKLBHD_42 | 0.0 | 1.0 | 0.0 |
| BMEKLBHD_43 | 0.0 | 1.0 | 0.0 |
| BMEKLBHD_44 | 0.0 | 1.0 | 0.0 |
| BMEKLBHD_45 | 0.0 | 1.0 | 0.0 |
| BMEKLBHD_46 | 0.0 | 1.0 | 0.0 |
| BMEKLBHD_47 | 0.0 | 1.0 | 0.0 |
| BMEKLBHD_48 | 0.0 | 1.0 | 0.0 |
| BMEKLBHD_49 | 0.0 | 1.0 | 0.0 |
| BMEKLBHD_50 | 0.0 | 1.0 | 0.0 |
| BMEKLBHD_51 | 0.0 | 1.0 | 0.0 |
| BMEKLBHD_52 | 1.0 | 0.0 | 1.0 |
| BMEKLBHD_53 | 0.0 | 1.0 | 0.0 |
| BMEKLBHD_54 | 0.0 | 1.0 | 0.0 |
| BMEKLBHD_55 | 0.0 | 1.0 | 0.0 |
| BMEKLBHD_56 | 0.0 | 1.0 | 0.0 |
| BMEKLBHD_57 | 0.0 | 1.0 | 0.0 |
| BMEKLBHD_58 | 0.0 | 1.0 | 0.0 |
| BMEKLBHD_59 | 0.0 | 1.0 | 0.0 |
| BMEKLBHD_60 | 0.0 | 1.0 | 0.0 |
| BMEKLBHD_61 | 0.0 | 1.0 | 0.0 |
| BMEKLBHD_62 | 0.0 | 1.0 | 0.0 |
| BMEKLBHD_63 | 0.0 | 1.0 | 0.0 |
| BMEKLBHD_64 | 0.0 | 1.0 | 0.0 |
| BMEKLBHD_65 | 0.0 | 1.0 | 0.0 |
| BMEKLBHD_66 | 0.0 | 1.0 | 0.0 |
| BMEKLBHD_67 | 0.0 | 1.0 | 0.0 |
| BMEKLBHD_68 | 0.0 | 1.0 | 0.0 |
| BMEKLBHD_69 | 0.0 | 1.0 | 0.0 |
| BMEKLBHD_70 | 1.0 | 0.0 | 1.0 |
| BMEKLBHD_71 | 1.0 | 0.0 | 1.0 |
| BMEKLBHD_72 | 0.0 | 1.0 | 0.0 |
| BMEKLBHD_73 | 0.0 | 1.0 | 0.0 |
| BMEKLBHD_74 | 0.0 | 1.0 | 0.0 |
| BMEKLBHD_75 | 0.0 | 1.0 | 0.0 |
| BMEKLBHD_76 | 0.0 | 1.0 | 0.0 |
| BMEKLBHD_77 | 0.0 | 1.0 | 0.0 |
| BMEKLBHD_78 | 0.0 | 1.0 | 0.0 |
| BMEKLBHD_79 | 0.0 | 1.0 | 0.0 |
| BMEKLBHD_80 | 0.0 | 1.0 | 0.0 |
| BMEKLBHD_81 | 0.0 | 1.0 | 0.0 |
| BMEKLBHD_82 | 0.0 | 1.0 | 0.0 |
| BMEKLBHD_83 | 1.0 | 0.0 | 1.0 |
| BMEKLBHD_84 | 1.0 | 0.0 | 1.0 |
| BMEKLBHD_85 | 0.0 | 1.0 | 0.0 |
| BMEKLBHD_86 | 0.0 | 1.0 | 0.0 |
| BMEKLBHD_87 | 1.0 | 0.0 | 1.0 |
| BMEKLBHD_88 | 0.0 | 1.0 | 0.0 |
| BMEKLBHD_89 | 0.0 | 1.0 | 0.0 |
| BMEKLBHD_90 | 1.0 | 0.0 | 1.0 |
| BMEKLBHD_91 | 1.0 | 0.0 | 1.0 |
| BMEKLBHD_92 | 1.0 | 0.0 | 1.0 |
| BMEKLBHD_93 | 1.0 | 0.0 | 1.0 |
| BMEKLBHD_94 | 1.0 | 0.0 | 1.0 |
| BMEKLBHD_95 | 0.0 | 1.0 | 0.0 |
| BMEKLBHD_96 | 0.0 | 1.0 | 0.0 |
| BMEKLBHD_97 | 0.0 | 1.0 | 0.0 |
| BMEKLBHD_98 | 0.0 | 1.0 | 0.0 |
| BMEKLBHD_99 | 1.0 | 0.0 | 1.0 |
| BMEKLBHD_100 | 0.0 | 1.0 | 0.0 |
| BMEKLBHD_101 | 0.0 | 1.0 | 0.0 |
| BMEKLBHD_102 | 0.0 | 1.0 | 0.0 |
| BMEKLBHD_103 | 1.0 | 0.0 | 1.0 |
| BMEKLBHD_104 | 1.0 | 0.0 | 1.0 |
| BMEKLBHD_105 | 1.0 | 0.0 | 1.0 |
| BMEKLBHD_106 | 1.0 | 0.0 | 1.0 |
| BMEKLBHD_107 | 1.0 | 0.0 | 1.0 |
| BMEKLBHD_108 | 1.0 | 0.0 | 1.0 |
| BMEKLBHD_110 | 1.0 | 0.0 | 1.0 |
| BMEKLBHD_111 | 0.0 | 1.0 | 0.0 |
| BMEKLBHD_112 | 0.0 | 1.0 | 0.0 |
| BMEKLBHD_113 | 1.0 | 0.0 | 1.0 |
| BMEKLBHD_114 | 1.0 | 0.0 | 1.0 |
| BMEKLBHD_115 | 0.0 | 1.0 | 0.0 |
| BMEKLBHD_116 | 1.0 | 0.0 | 1.0 |
| BMEKLBHD_117 | 0.0 | 1.0 | 0.0 |
| BMEKLBHD_118 | 1.0 | 0.0 | 1.0 |
| BMEKLBHD_119 | 1.0 | 0.0 | 1.0 |
| BMEKLBHD_120 | 0.0 | 1.0 | 0.0 |
| BMEKLBHD_121 | 1.0 | 0.0 | 1.0 |
| BMEKLBHD_122 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| BMEKLBHD_35 | 495 | 27183 | False | Myoviridae | VOG4691, VOG4550, VOG0573, VOG1348, VOG1433, VOG1956, VOG6163, VOG4699, VOG1352, VOG1883, VOG1881, VOG1353, VOG4778, VOG1942, VOG2779, VOG1915, VOG4865, VOG4564, VOG1912, VOG10227, VOG0796, VOG4699, VOG0045, VOG0638, VOG0198, VOG4010 |
| BMEKLBHD_35 | 28598 | 33330 | False | Unknown | VOG6256, VOG4693, VOG7236, VOG4855, VOG0186 |
| BMEKLBHD_52 | 5807 | 21962 | False | Siphoviridae | VOG0275, VOG9667, VOG4632, VOG4609, VOG0205, VOG4841, VOG4581, VOG4544, VOG5051, VOG4556, VOG4568, VOG0204, VOG0198, VOG8908 |
Phigaro v2.4.0 (Database: Jan. 2024 release)