Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CDDJPFOC_102 | 64861 | 65565 | WalR | 6.02e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| CDDJPFOC_78 | 6918 | 7112 | CspR | 3.15e-31 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| CDDJPFOC_78 | 6918 | 7115 | CspA | 4.83e-31 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| CDDJPFOC_96 | 1818 | 2685 | rep38 | 869 / 903 | 95.05 | CP005943 |
| CDDJPFOC_115 | 147 | 1103 | repUS64 | 958 / 954 | 92.07 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CDDJPFOC_1 | 1.0 | 0.0 | 1.0 |
| CDDJPFOC_2 | 1.0 | 0.0 | 1.0 |
| CDDJPFOC_3 | 1.0 | 0.0 | 1.0 |
| CDDJPFOC_4 | 1.0 | 0.0 | 1.0 |
| CDDJPFOC_5 | 0.0 | 1.0 | 0.0 |
| CDDJPFOC_6 | 0.0 | 1.0 | 0.0 |
| CDDJPFOC_7 | 1.0 | 0.0 | 1.0 |
| CDDJPFOC_8 | 1.0 | 0.0 | 1.0 |
| CDDJPFOC_9 | 1.0 | 0.0 | 1.0 |
| CDDJPFOC_10 | 1.0 | 0.0 | 1.0 |
| CDDJPFOC_11 | 0.0 | 1.0 | 0.0 |
| CDDJPFOC_22 | 0.0 | 1.0 | 0.0 |
| CDDJPFOC_28 | 0.0 | 1.0 | 0.0 |
| CDDJPFOC_29 | 0.0 | 1.0 | 0.0 |
| CDDJPFOC_30 | 0.0 | 1.0 | 0.0 |
| CDDJPFOC_31 | 0.0 | 1.0 | 0.0 |
| CDDJPFOC_32 | 0.0 | 1.0 | 0.0 |
| CDDJPFOC_33 | 1.0 | 0.0 | 1.0 |
| CDDJPFOC_34 | 0.0 | 1.0 | 0.0 |
| CDDJPFOC_35 | 0.0 | 1.0 | 0.0 |
| CDDJPFOC_36 | 0.0 | 1.0 | 0.0 |
| CDDJPFOC_37 | 0.0 | 1.0 | 0.0 |
| CDDJPFOC_38 | 0.0 | 1.0 | 0.0 |
| CDDJPFOC_39 | 0.0 | 1.0 | 0.0 |
| CDDJPFOC_40 | 0.0 | 1.0 | 0.0 |
| CDDJPFOC_41 | 0.0 | 1.0 | 0.0 |
| CDDJPFOC_42 | 0.0 | 1.0 | 0.0 |
| CDDJPFOC_43 | 0.0 | 1.0 | 0.0 |
| CDDJPFOC_44 | 0.0 | 1.0 | 0.0 |
| CDDJPFOC_45 | 0.0 | 1.0 | 0.0 |
| CDDJPFOC_46 | 0.0 | 1.0 | 0.0 |
| CDDJPFOC_47 | 0.0 | 1.0 | 0.0 |
| CDDJPFOC_48 | 0.0 | 1.0 | 0.0 |
| CDDJPFOC_49 | 0.0 | 1.0 | 0.0 |
| CDDJPFOC_50 | 0.0 | 1.0 | 0.0 |
| CDDJPFOC_51 | 0.0 | 1.0 | 0.0 |
| CDDJPFOC_52 | 0.0 | 1.0 | 0.0 |
| CDDJPFOC_53 | 0.0 | 1.0 | 0.0 |
| CDDJPFOC_54 | 0.0 | 1.0 | 0.0 |
| CDDJPFOC_55 | 0.0 | 1.0 | 0.0 |
| CDDJPFOC_56 | 0.0 | 1.0 | 0.0 |
| CDDJPFOC_57 | 0.0 | 1.0 | 0.0 |
| CDDJPFOC_58 | 0.0 | 1.0 | 0.0 |
| CDDJPFOC_59 | 0.0 | 1.0 | 0.0 |
| CDDJPFOC_60 | 0.0 | 1.0 | 0.0 |
| CDDJPFOC_61 | 1.0 | 0.0 | 1.0 |
| CDDJPFOC_62 | 0.0 | 1.0 | 0.0 |
| CDDJPFOC_63 | 0.0 | 1.0 | 0.0 |
| CDDJPFOC_64 | 0.0 | 1.0 | 0.0 |
| CDDJPFOC_65 | 0.0 | 1.0 | 0.0 |
| CDDJPFOC_66 | 1.0 | 0.0 | 1.0 |
| CDDJPFOC_67 | 0.0 | 1.0 | 0.0 |
| CDDJPFOC_68 | 1.0 | 0.0 | 1.0 |
| CDDJPFOC_69 | 0.0 | 1.0 | 0.0 |
| CDDJPFOC_70 | 1.0 | 0.0 | 1.0 |
| CDDJPFOC_71 | 0.0 | 1.0 | 0.0 |
| CDDJPFOC_72 | 0.0 | 1.0 | 0.0 |
| CDDJPFOC_73 | 0.0 | 1.0 | 0.0 |
| CDDJPFOC_74 | 0.0 | 1.0 | 0.0 |
| CDDJPFOC_75 | 1.0 | 0.0 | 1.0 |
| CDDJPFOC_76 | 1.0 | 0.0 | 1.0 |
| CDDJPFOC_77 | 0.0 | 1.0 | 0.0 |
| CDDJPFOC_78 | 0.0 | 1.0 | 0.0 |
| CDDJPFOC_79 | 0.0 | 1.0 | 0.0 |
| CDDJPFOC_80 | 0.0 | 1.0 | 0.0 |
| CDDJPFOC_81 | 1.0 | 0.0 | 1.0 |
| CDDJPFOC_82 | 1.0 | 0.0 | 1.0 |
| CDDJPFOC_83 | 1.0 | 0.0 | 1.0 |
| CDDJPFOC_84 | 1.0 | 0.0 | 1.0 |
| CDDJPFOC_85 | 0.0 | 1.0 | 0.0 |
| CDDJPFOC_86 | 1.0 | 0.0 | 1.0 |
| CDDJPFOC_87 | 1.0 | 0.0 | 1.0 |
| CDDJPFOC_88 | 1.0 | 0.0 | 1.0 |
| CDDJPFOC_89 | 0.0 | 1.0 | 0.0 |
| CDDJPFOC_90 | 1.0 | 0.0 | 1.0 |
| CDDJPFOC_91 | 0.0 | 1.0 | 0.0 |
| CDDJPFOC_92 | 1.0 | 0.0 | 1.0 |
| CDDJPFOC_93 | 1.0 | 0.0 | 1.0 |
| CDDJPFOC_94 | 1.0 | 0.0 | 1.0 |
| CDDJPFOC_95 | 0.0 | 1.0 | 0.0 |
| CDDJPFOC_96 | 1.0 | 0.0 | 1.0 |
| CDDJPFOC_97 | 1.0 | 0.0 | 1.0 |
| CDDJPFOC_98 | 1.0 | 0.0 | 1.0 |
| CDDJPFOC_99 | 1.0 | 0.0 | 1.0 |
| CDDJPFOC_100 | 1.0 | 0.0 | 1.0 |
| CDDJPFOC_101 | 0.0 | 1.0 | 0.0 |
| CDDJPFOC_102 | 0.0 | 1.0 | 0.0 |
| CDDJPFOC_104 | 0.0 | 1.0 | 0.0 |
| CDDJPFOC_105 | 1.0 | 0.0 | 1.0 |
| CDDJPFOC_106 | 1.0 | 0.0 | 1.0 |
| CDDJPFOC_107 | 0.0 | 1.0 | 0.0 |
| CDDJPFOC_108 | 1.0 | 0.0 | 1.0 |
| CDDJPFOC_109 | 1.0 | 0.0 | 1.0 |
| CDDJPFOC_110 | 1.0 | 0.0 | 1.0 |
| CDDJPFOC_111 | 1.0 | 0.0 | 1.0 |
| CDDJPFOC_112 | 1.0 | 0.0 | 1.0 |
| CDDJPFOC_113 | 0.0 | 1.0 | 0.0 |
| CDDJPFOC_114 | 1.0 | 0.0 | 1.0 |
| CDDJPFOC_115 | 1.0 | 0.0 | 1.0 |
| CDDJPFOC_116 | 1.0 | 0.0 | 1.0 |
| CDDJPFOC_117 | 1.0 | 0.0 | 1.0 |
| CDDJPFOC_119 | 1.0 | 0.0 | 1.0 |
| CDDJPFOC_120 | 1.0 | 0.0 | 1.0 |
| CDDJPFOC_121 | 1.0 | 0.0 | 1.0 |
| CDDJPFOC_122 | 1.0 | 0.0 | 1.0 |
| CDDJPFOC_123 | 1.0 | 0.0 | 1.0 |
| CDDJPFOC_124 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CDDJPFOC_30 | 64075 | 67400 | False | Unknown | VOG9667, VOG11077, VOG3549, VOG0650 |
| CDDJPFOC_33 | 876 | 20194 | False | Siphoviridae | VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG6163, VOG4605, VOG4599, VOG10957, VOG8870, VOG8868 |
| CDDJPFOC_53 | 2272 | 19200 | False | Siphoviridae | VOG6163, VOG0725, VOG0799, VOG0724, VOG9583, VOG4713, VOG1329, VOG4555, VOG4564, VOG0720, VOG10227, VOG0796, VOG9667, VOG0198 |
| CDDJPFOC_54 | 2379 | 19537 | False | Siphoviridae | VOG4619, VOG0801, VOG4910, VOG0701, VOG9763, VOG0698, VOG0697, VOG0696, VOG0695, VOG4572, VOG4555, VOG0692, VOG0691, VOG4544, VOG0796, VOG9846 |
Phigaro v2.4.0 (Database: Jan. 2024 release)