Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LBIPDFGG_52 | 4231 | 4428 | CspA | 1.56e-29 | cold shock protein | 86.36 | 100.00 | CAA62903 |
| LBIPDFGG_52 | 4231 | 4425 | CspR | 1.33e-27 | cold shock protein | 83.08 | 98.48 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LBIPDFGG_1 | 1.0 | 0.0 | 1.0 |
| LBIPDFGG_2 | 1.0 | 0.0 | 1.0 |
| LBIPDFGG_3 | 1.0 | 0.0 | 1.0 |
| LBIPDFGG_4 | 1.0 | 0.0 | 1.0 |
| LBIPDFGG_5 | 1.0 | 0.0 | 1.0 |
| LBIPDFGG_6 | 1.0 | 0.0 | 1.0 |
| LBIPDFGG_7 | 0.0 | 1.0 | 0.0 |
| LBIPDFGG_8 | 1.0 | 0.0 | 1.0 |
| LBIPDFGG_9 | 1.0 | 0.0 | 1.0 |
| LBIPDFGG_10 | 1.0 | 0.0 | 1.0 |
| LBIPDFGG_11 | 0.0 | 1.0 | 0.0 |
| LBIPDFGG_12 | 1.0 | 0.0 | 1.0 |
| LBIPDFGG_13 | 1.0 | 0.0 | 1.0 |
| LBIPDFGG_14 | 1.0 | 0.0 | 1.0 |
| LBIPDFGG_15 | 1.0 | 0.0 | 1.0 |
| LBIPDFGG_16 | 1.0 | 0.0 | 1.0 |
| LBIPDFGG_22 | 0.0 | 1.0 | 0.0 |
| LBIPDFGG_33 | 0.0 | 1.0 | 0.0 |
| LBIPDFGG_34 | 0.0 | 1.0 | 0.0 |
| LBIPDFGG_35 | 0.0 | 1.0 | 0.0 |
| LBIPDFGG_36 | 0.0 | 1.0 | 0.0 |
| LBIPDFGG_37 | 0.0 | 1.0 | 0.0 |
| LBIPDFGG_38 | 0.0 | 1.0 | 0.0 |
| LBIPDFGG_39 | 0.0 | 1.0 | 0.0 |
| LBIPDFGG_40 | 0.0 | 1.0 | 0.0 |
| LBIPDFGG_41 | 0.0 | 1.0 | 0.0 |
| LBIPDFGG_42 | 0.0 | 1.0 | 0.0 |
| LBIPDFGG_43 | 0.0 | 1.0 | 0.0 |
| LBIPDFGG_44 | 0.0 | 1.0 | 0.0 |
| LBIPDFGG_45 | 0.0 | 1.0 | 0.0 |
| LBIPDFGG_46 | 0.0 | 1.0 | 0.0 |
| LBIPDFGG_47 | 0.0 | 1.0 | 0.0 |
| LBIPDFGG_48 | 0.0 | 1.0 | 0.0 |
| LBIPDFGG_49 | 0.0 | 1.0 | 0.0 |
| LBIPDFGG_50 | 0.0 | 1.0 | 0.0 |
| LBIPDFGG_51 | 0.0 | 1.0 | 0.0 |
| LBIPDFGG_52 | 0.0 | 1.0 | 0.0 |
| LBIPDFGG_53 | 0.0 | 1.0 | 0.0 |
| LBIPDFGG_54 | 0.0 | 1.0 | 0.0 |
| LBIPDFGG_55 | 0.0 | 1.0 | 0.0 |
| LBIPDFGG_56 | 0.0 | 1.0 | 0.0 |
| LBIPDFGG_57 | 0.0 | 1.0 | 0.0 |
| LBIPDFGG_58 | 0.0 | 1.0 | 0.0 |
| LBIPDFGG_59 | 0.0 | 1.0 | 0.0 |
| LBIPDFGG_60 | 0.0 | 1.0 | 0.0 |
| LBIPDFGG_61 | 0.0 | 1.0 | 0.0 |
| LBIPDFGG_62 | 0.0 | 1.0 | 0.0 |
| LBIPDFGG_63 | 0.0 | 1.0 | 0.0 |
| LBIPDFGG_64 | 0.0 | 1.0 | 0.0 |
| LBIPDFGG_65 | 0.0 | 1.0 | 0.0 |
| LBIPDFGG_66 | 0.0 | 1.0 | 0.0 |
| LBIPDFGG_67 | 0.0 | 1.0 | 0.0 |
| LBIPDFGG_68 | 0.0 | 1.0 | 0.0 |
| LBIPDFGG_69 | 0.0 | 1.0 | 0.0 |
| LBIPDFGG_70 | 0.0 | 1.0 | 0.0 |
| LBIPDFGG_71 | 0.0 | 1.0 | 0.0 |
| LBIPDFGG_72 | 1.0 | 0.0 | 1.0 |
| LBIPDFGG_73 | 0.0 | 1.0 | 0.0 |
| LBIPDFGG_74 | 0.0 | 1.0 | 0.0 |
| LBIPDFGG_75 | 0.0 | 1.0 | 0.0 |
| LBIPDFGG_76 | 0.0 | 1.0 | 0.0 |
| LBIPDFGG_77 | 1.0 | 0.0 | 1.0 |
| LBIPDFGG_78 | 0.0 | 1.0 | 0.0 |
| LBIPDFGG_79 | 0.0 | 1.0 | 0.0 |
| LBIPDFGG_80 | 0.0 | 1.0 | 0.0 |
| LBIPDFGG_81 | 1.0 | 0.0 | 1.0 |
| LBIPDFGG_82 | 0.0 | 1.0 | 0.0 |
| LBIPDFGG_83 | 0.0 | 1.0 | 0.0 |
| LBIPDFGG_84 | 0.0 | 1.0 | 0.0 |
| LBIPDFGG_85 | 0.0 | 1.0 | 0.0 |
| LBIPDFGG_86 | 0.0 | 1.0 | 0.0 |
| LBIPDFGG_87 | 0.0 | 1.0 | 0.0 |
| LBIPDFGG_88 | 0.0 | 1.0 | 0.0 |
| LBIPDFGG_89 | 1.0 | 0.0 | 1.0 |
| LBIPDFGG_90 | 0.0 | 1.0 | 0.0 |
| LBIPDFGG_91 | 0.0 | 1.0 | 0.0 |
| LBIPDFGG_92 | 0.0 | 1.0 | 0.0 |
| LBIPDFGG_93 | 0.0 | 1.0 | 0.0 |
| LBIPDFGG_94 | 0.0 | 1.0 | 0.0 |
| LBIPDFGG_95 | 0.0 | 1.0 | 0.0 |
| LBIPDFGG_96 | 0.0 | 1.0 | 0.0 |
| LBIPDFGG_97 | 0.0 | 1.0 | 0.0 |
| LBIPDFGG_98 | 0.0 | 1.0 | 0.0 |
| LBIPDFGG_99 | 0.0 | 1.0 | 0.0 |
| LBIPDFGG_100 | 0.0 | 1.0 | 0.0 |
| LBIPDFGG_101 | 0.0 | 1.0 | 0.0 |
| LBIPDFGG_102 | 0.0 | 1.0 | 0.0 |
| LBIPDFGG_103 | 0.0 | 1.0 | 0.0 |
| LBIPDFGG_104 | 0.0 | 1.0 | 0.0 |
| LBIPDFGG_105 | 0.0 | 1.0 | 0.0 |
| LBIPDFGG_106 | 0.0 | 1.0 | 0.0 |
| LBIPDFGG_107 | 0.0 | 1.0 | 0.0 |
| LBIPDFGG_108 | 0.0 | 1.0 | 0.0 |
| LBIPDFGG_109 | 1.0 | 0.0 | 1.0 |
| LBIPDFGG_110 | 0.0 | 1.0 | 0.0 |
| LBIPDFGG_111 | 1.0 | 0.0 | 1.0 |
| LBIPDFGG_113 | 1.0 | 0.0 | 1.0 |
| LBIPDFGG_114 | 0.0 | 1.0 | 0.0 |
| LBIPDFGG_115 | 0.0 | 1.0 | 0.0 |
| LBIPDFGG_116 | 1.0 | 0.0 | 1.0 |
| LBIPDFGG_117 | 1.0 | 0.0 | 1.0 |
| LBIPDFGG_118 | 0.0 | 1.0 | 0.0 |
| LBIPDFGG_119 | 0.0 | 1.0 | 0.0 |
| LBIPDFGG_120 | 1.0 | 0.0 | 1.0 |
| LBIPDFGG_121 | 1.0 | 0.0 | 1.0 |
| LBIPDFGG_122 | 1.0 | 0.0 | 1.0 |
| LBIPDFGG_123 | 1.0 | 0.0 | 1.0 |
| LBIPDFGG_124 | 1.0 | 0.0 | 1.0 |
| LBIPDFGG_126 | 1.0 | 0.0 | 1.0 |
| LBIPDFGG_127 | 0.0 | 1.0 | 0.0 |
| LBIPDFGG_128 | 1.0 | 0.0 | 1.0 |
| LBIPDFGG_129 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LBIPDFGG_42 | 3984 | 12023 | False | Siphoviridae | VOG0275, VOG4677, VOG1159, VOG4585, VOG0275 |
| LBIPDFGG_49 | 4510 | 25463 | False | Siphoviridae | VOG0641, VOG4589, VOG0204, VOG4553, VOG4573, VOG4556, VOG4544, VOG4571, VOG4581, VOG0198, VOG4548, VOG0327, VOG4606, VOG0026, VOG0021, VOG1047, VOG1047, VOG7438, VOG10679, VOG0052 |
| LBIPDFGG_96 | 32756 | 43310 | False | Siphoviridae | VOG10934, VOG2703, VOG5292, VOG0275, VOG7424, VOG0792, VOG4821, VOG0862 |
Phigaro v2.4.0 (Database: Jan. 2024 release)