Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| AIAJFBNF_1 | 397331 | 398068 | ErmB | ARO:3000375 | ErmB | 98.37 | 98.79 | AF242872.1 |
| AIAJFBNF_19 | 3358 | 5283 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| AIAJFBNF_1 | 400407 | 401273 | ant(6)-Ia | Streptomycin | 100.00 | 100.00 | KF864551 |
| AIAJFBNF_1 | 397331 | 398068 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.86 | 100.00 | U18931 |
| AIAJFBNF_19 | 3358 | 5283 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| AIAJFBNF_1 | 400407 | 401270 | aadE | aminoglycoside 6-adenylyltransferase AadE | EXACTX | 100.00 | 100.00 | WP_001255868.1 |
| AIAJFBNF_1 | 397331 | 398065 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | BLASTX | 99.59 | 100.00 | WP_002292226.1 |
| AIAJFBNF_19 | 3358 | 5280 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| AIAJFBNF_1 | 0.0 | 1.0 | 0.0 |
| AIAJFBNF_2 | 0.0 | 1.0 | 0.0 |
| AIAJFBNF_6 | 0.0 | 1.0 | 0.0 |
| AIAJFBNF_7 | 0.0 | 1.0 | 0.0 |
| AIAJFBNF_8 | 0.0 | 1.0 | 0.0 |
| AIAJFBNF_9 | 0.0 | 1.0 | 0.0 |
| AIAJFBNF_10 | 0.0 | 1.0 | 0.0 |
| AIAJFBNF_11 | 0.0 | 1.0 | 0.0 |
| AIAJFBNF_12 | 0.0 | 1.0 | 0.0 |
| AIAJFBNF_13 | 0.0 | 1.0 | 0.0 |
| AIAJFBNF_14 | 0.0 | 1.0 | 0.0 |
| AIAJFBNF_15 | 0.0 | 1.0 | 0.0 |
| AIAJFBNF_16 | 0.0 | 1.0 | 0.0 |
| AIAJFBNF_17 | 0.0 | 1.0 | 0.0 |
| AIAJFBNF_18 | 0.0 | 1.0 | 0.0 |
| AIAJFBNF_19 | 0.0 | 1.0 | 0.0 |
| AIAJFBNF_20 | 0.0 | 1.0 | 0.0 |
| AIAJFBNF_21 | 0.0 | 1.0 | 0.0 |
| AIAJFBNF_22 | 0.0 | 1.0 | 0.0 |
| AIAJFBNF_23 | 0.0 | 1.0 | 0.0 |
| AIAJFBNF_24 | 0.0 | 1.0 | 0.0 |
| AIAJFBNF_25 | 0.0 | 1.0 | 0.0 |
| AIAJFBNF_26 | 0.0 | 1.0 | 0.0 |
| AIAJFBNF_27 | 0.0 | 1.0 | 0.0 |
| AIAJFBNF_28 | 0.0 | 1.0 | 0.0 |
| AIAJFBNF_29 | 0.0 | 1.0 | 0.0 |
| AIAJFBNF_30 | 0.0 | 1.0 | 0.0 |
| AIAJFBNF_31 | 0.0 | 1.0 | 0.0 |
| AIAJFBNF_32 | 0.0 | 1.0 | 0.0 |
| AIAJFBNF_33 | 0.0 | 1.0 | 0.0 |
| AIAJFBNF_34 | 0.0 | 1.0 | 0.0 |
| AIAJFBNF_35 | 0.0 | 1.0 | 0.0 |
| AIAJFBNF_36 | 0.0 | 1.0 | 0.0 |
| AIAJFBNF_37 | 0.0 | 1.0 | 0.0 |
| AIAJFBNF_38 | 0.0 | 1.0 | 0.0 |
| AIAJFBNF_39 | 0.0 | 1.0 | 0.0 |
| AIAJFBNF_40 | 1.0 | 0.0 | 1.0 |
| AIAJFBNF_41 | 0.0 | 1.0 | 0.0 |
| AIAJFBNF_42 | 0.0 | 1.0 | 0.0 |
| AIAJFBNF_43 | 0.0 | 1.0 | 0.0 |
| AIAJFBNF_44 | 0.0 | 1.0 | 0.0 |
| AIAJFBNF_45 | 1.0 | 0.0 | 1.0 |
| AIAJFBNF_46 | 0.0 | 1.0 | 0.0 |
| AIAJFBNF_47 | 0.0 | 1.0 | 0.0 |
| AIAJFBNF_48 | 0.0 | 1.0 | 0.0 |
| AIAJFBNF_49 | 0.0 | 1.0 | 0.0 |
| AIAJFBNF_50 | 0.0 | 1.0 | 0.0 |
| AIAJFBNF_51 | 0.0 | 1.0 | 0.0 |
| AIAJFBNF_52 | 0.0 | 1.0 | 0.0 |
| AIAJFBNF_53 | 0.0 | 1.0 | 0.0 |
| AIAJFBNF_54 | 1.0 | 0.0 | 1.0 |
| AIAJFBNF_55 | 1.0 | 0.0 | 1.0 |
| AIAJFBNF_56 | 0.0 | 1.0 | 0.0 |
| AIAJFBNF_57 | 1.0 | 0.0 | 1.0 |
| AIAJFBNF_58 | 1.0 | 0.0 | 1.0 |
| AIAJFBNF_59 | 0.0 | 1.0 | 0.0 |
| AIAJFBNF_60 | 1.0 | 0.0 | 1.0 |
| AIAJFBNF_61 | 1.0 | 0.0 | 1.0 |
| AIAJFBNF_62 | 1.0 | 0.0 | 1.0 |
| AIAJFBNF_64 | 0.0 | 1.0 | 0.0 |
| AIAJFBNF_65 | 0.0 | 1.0 | 0.0 |
| AIAJFBNF_66 | 1.0 | 0.0 | 1.0 |
| AIAJFBNF_67 | 1.0 | 0.0 | 1.0 |
| AIAJFBNF_69 | 1.0 | 0.0 | 1.0 |
| AIAJFBNF_70 | 0.0 | 1.0 | 0.0 |
| AIAJFBNF_71 | 1.0 | 0.0 | 1.0 |
| AIAJFBNF_72 | 0.0 | 1.0 | 0.0 |
| AIAJFBNF_73 | 1.0 | 0.0 | 1.0 |
| AIAJFBNF_74 | 1.0 | 0.0 | 1.0 |
| AIAJFBNF_76 | 0.0 | 1.0 | 0.0 |
| AIAJFBNF_77 | 1.0 | 0.0 | 1.0 |
| AIAJFBNF_78 | 1.0 | 0.0 | 1.0 |
| AIAJFBNF_79 | 1.0 | 0.0 | 1.0 |
| AIAJFBNF_80 | 0.0 | 1.0 | 0.0 |
| AIAJFBNF_81 | 0.0 | 1.0 | 0.0 |
| AIAJFBNF_82 | 0.0 | 1.0 | 0.0 |
| AIAJFBNF_92 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| AIAJFBNF_9 | 151374 | 162339 | False | Siphoviridae | VOG5095, |
| AIAJFBNF_10 | 50479 | 59899 | False | Siphoviridae | VOG0749, |
| AIAJFBNF_48 | 198302 | 205707 | False | Unknown | VOG1931, |
Phigaro v2.4.0 (Database: Jan. 2024 release)