Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PMBNDLFE_13 | 35053 | 35757 | WalR | 5.65e-113 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| PMBNDLFE_1 | 10691 | 10888 | CspR | 3.69e-33 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| PMBNDLFE_103 | 1007 | 1510 | repUS54 | 504 / 690 | 82.14 | EU185047 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PMBNDLFE_1 | 0.0 | 1.0 | 0.0 |
| PMBNDLFE_2 | 0.0 | 1.0 | 0.0 |
| PMBNDLFE_4 | 1.0 | 0.0 | 1.0 |
| PMBNDLFE_5 | 1.0 | 0.0 | 1.0 |
| PMBNDLFE_7 | 1.0 | 0.0 | 1.0 |
| PMBNDLFE_8 | 1.0 | 0.0 | 1.0 |
| PMBNDLFE_10 | 1.0 | 0.0 | 1.0 |
| PMBNDLFE_11 | 0.0 | 1.0 | 0.0 |
| PMBNDLFE_12 | 1.0 | 0.0 | 1.0 |
| PMBNDLFE_13 | 0.0 | 1.0 | 0.0 |
| PMBNDLFE_14 | 1.0 | 0.0 | 1.0 |
| PMBNDLFE_17 | 0.0 | 1.0 | 0.0 |
| PMBNDLFE_18 | 0.0 | 1.0 | 0.0 |
| PMBNDLFE_19 | 0.0 | 1.0 | 0.0 |
| PMBNDLFE_20 | 0.0 | 1.0 | 0.0 |
| PMBNDLFE_21 | 1.0 | 0.0 | 1.0 |
| PMBNDLFE_22 | 0.0 | 1.0 | 0.0 |
| PMBNDLFE_23 | 0.0 | 1.0 | 0.0 |
| PMBNDLFE_24 | 0.0 | 1.0 | 0.0 |
| PMBNDLFE_25 | 0.0 | 1.0 | 0.0 |
| PMBNDLFE_26 | 0.0 | 1.0 | 0.0 |
| PMBNDLFE_27 | 0.0 | 1.0 | 0.0 |
| PMBNDLFE_29 | 1.0 | 0.0 | 1.0 |
| PMBNDLFE_30 | 0.0 | 1.0 | 0.0 |
| PMBNDLFE_31 | 0.0 | 1.0 | 0.0 |
| PMBNDLFE_32 | 0.0 | 1.0 | 0.0 |
| PMBNDLFE_33 | 0.0 | 1.0 | 0.0 |
| PMBNDLFE_34 | 0.0 | 1.0 | 0.0 |
| PMBNDLFE_35 | 1.0 | 0.0 | 1.0 |
| PMBNDLFE_36 | 0.0 | 1.0 | 0.0 |
| PMBNDLFE_37 | 0.0 | 1.0 | 0.0 |
| PMBNDLFE_38 | 0.0 | 1.0 | 0.0 |
| PMBNDLFE_39 | 0.0 | 1.0 | 0.0 |
| PMBNDLFE_40 | 0.0 | 1.0 | 0.0 |
| PMBNDLFE_41 | 0.0 | 1.0 | 0.0 |
| PMBNDLFE_42 | 0.0 | 1.0 | 0.0 |
| PMBNDLFE_43 | 1.0 | 0.0 | 1.0 |
| PMBNDLFE_44 | 0.0 | 1.0 | 0.0 |
| PMBNDLFE_45 | 1.0 | 0.0 | 1.0 |
| PMBNDLFE_46 | 0.0 | 1.0 | 0.0 |
| PMBNDLFE_47 | 0.0 | 1.0 | 0.0 |
| PMBNDLFE_48 | 0.0 | 1.0 | 0.0 |
| PMBNDLFE_49 | 0.0 | 1.0 | 0.0 |
| PMBNDLFE_50 | 0.0 | 1.0 | 0.0 |
| PMBNDLFE_51 | 1.0 | 0.0 | 1.0 |
| PMBNDLFE_52 | 0.0 | 1.0 | 0.0 |
| PMBNDLFE_53 | 1.0 | 0.0 | 1.0 |
| PMBNDLFE_54 | 0.0 | 1.0 | 0.0 |
| PMBNDLFE_55 | 0.0 | 1.0 | 0.0 |
| PMBNDLFE_56 | 0.0 | 1.0 | 0.0 |
| PMBNDLFE_57 | 0.0 | 1.0 | 0.0 |
| PMBNDLFE_58 | 0.0 | 1.0 | 0.0 |
| PMBNDLFE_59 | 0.0 | 1.0 | 0.0 |
| PMBNDLFE_60 | 0.0 | 1.0 | 0.0 |
| PMBNDLFE_61 | 0.0 | 1.0 | 0.0 |
| PMBNDLFE_62 | 0.0 | 1.0 | 0.0 |
| PMBNDLFE_63 | 0.0 | 1.0 | 0.0 |
| PMBNDLFE_64 | 0.0 | 1.0 | 0.0 |
| PMBNDLFE_66 | 0.0 | 1.0 | 0.0 |
| PMBNDLFE_67 | 0.0 | 1.0 | 0.0 |
| PMBNDLFE_68 | 0.0 | 1.0 | 0.0 |
| PMBNDLFE_69 | 0.0 | 1.0 | 0.0 |
| PMBNDLFE_70 | 1.0 | 0.0 | 1.0 |
| PMBNDLFE_71 | 0.0 | 1.0 | 0.0 |
| PMBNDLFE_72 | 1.0 | 0.0 | 1.0 |
| PMBNDLFE_73 | 0.0 | 1.0 | 0.0 |
| PMBNDLFE_74 | 0.0 | 1.0 | 0.0 |
| PMBNDLFE_75 | 0.0 | 1.0 | 0.0 |
| PMBNDLFE_76 | 0.0 | 1.0 | 0.0 |
| PMBNDLFE_77 | 1.0 | 0.0 | 1.0 |
| PMBNDLFE_83 | 1.0 | 0.0 | 1.0 |
| PMBNDLFE_84 | 1.0 | 0.0 | 1.0 |
| PMBNDLFE_85 | 1.0 | 0.0 | 1.0 |
| PMBNDLFE_86 | 1.0 | 0.0 | 1.0 |
| PMBNDLFE_89 | 1.0 | 0.0 | 1.0 |
| PMBNDLFE_90 | 0.0 | 1.0 | 0.0 |
| PMBNDLFE_91 | 0.0 | 1.0 | 0.0 |
| PMBNDLFE_92 | 0.0 | 1.0 | 0.0 |
| PMBNDLFE_93 | 1.0 | 0.0 | 1.0 |
| PMBNDLFE_94 | 1.0 | 0.0 | 1.0 |
| PMBNDLFE_95 | 1.0 | 0.0 | 1.0 |
| PMBNDLFE_96 | 1.0 | 0.0 | 1.0 |
| PMBNDLFE_97 | 1.0 | 0.0 | 1.0 |
| PMBNDLFE_98 | 1.0 | 0.0 | 1.0 |
| PMBNDLFE_100 | 1.0 | 0.0 | 1.0 |
| PMBNDLFE_101 | 1.0 | 0.0 | 1.0 |
| PMBNDLFE_102 | 0.0 | 1.0 | 0.0 |
| PMBNDLFE_103 | 1.0 | 0.0 | 1.0 |
| PMBNDLFE_104 | 0.0 | 1.0 | 0.0 |
| PMBNDLFE_107 | 1.0 | 0.0 | 1.0 |
| PMBNDLFE_108 | 1.0 | 0.0 | 1.0 |
| PMBNDLFE_109 | 1.0 | 0.0 | 1.0 |
| PMBNDLFE_110 | 0.0 | 1.0 | 0.0 |
| PMBNDLFE_111 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PMBNDLFE_1 | 31763 | 64819 | False | Siphoviridae | VOG8241, VOG1309, VOG0186, VOG4566, VOG6238, VOG1638, VOG8987, VOG11003, VOG9860, VOG6623, VOG4693, VOG10869, VOG0198, VOG4892, VOG4570, VOG4549, VOG0796, VOG4544, VOG0720, VOG4564, VOG4555, VOG3434, VOG1887, VOG1322, VOG4713, VOG0723, VOG5660, VOG0724, VOG0799, VOG0725, VOG0800, VOG4545, VOG4605, VOG4599, VOG7888, VOG0054, VOG8294 |
Phigaro v2.4.0 (Database: Jan. 2024 release)