Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GLMKCGIP_35 | 26237 | 29800 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 92.48 | 100.08 | NC_008618.1 |
| GLMKCGIP_25 | 127 | 621 | dfrF | ARO:3002867 | dfrF | 100.00 | 100.00 | AF028812.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GLMKCGIP_25 | 130 | 621 | dfrF | trimethoprim-resistant dihydrofolate reductase DfrF | EXACTX | 100.00 | 100.00 | WP_002322211.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GLMKCGIP_1 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_2 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_3 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_4 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_5 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_6 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_7 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_8 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_9 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_10 | 1.0 | 0.0 | 1.0 |
| GLMKCGIP_11 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_12 | 1.0 | 0.0 | 1.0 |
| GLMKCGIP_13 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_14 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_15 | 1.0 | 0.0 | 1.0 |
| GLMKCGIP_16 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_17 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_18 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_19 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_20 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_21 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_22 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_23 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_24 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_25 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_26 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_27 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_28 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_29 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_30 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_31 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_32 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_33 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_34 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_35 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_36 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_37 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_38 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_39 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_40 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_41 | 1.0 | 0.0 | 1.0 |
| GLMKCGIP_42 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_43 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_44 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_45 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_46 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_47 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_48 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_49 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_50 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_51 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_52 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_53 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_54 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_55 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_56 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_57 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_58 | 1.0 | 0.0 | 1.0 |
| GLMKCGIP_59 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_60 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_61 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_62 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_63 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_64 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_65 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_66 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_67 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_68 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_69 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_70 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_71 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_72 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_73 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_74 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_75 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_76 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_77 | 1.0 | 0.0 | 1.0 |
| GLMKCGIP_78 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_79 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_80 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_81 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_82 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_83 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_84 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_85 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_86 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_87 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_88 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_89 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_90 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_91 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_92 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_93 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_94 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_95 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_96 | 1.0 | 0.0 | 1.0 |
| GLMKCGIP_97 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_98 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_99 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_100 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_101 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_102 | 0.0 | 1.0 | 0.0 |
| GLMKCGIP_103 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)