Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 0 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GDCHINON_17 | 1006 | 2212 | tet(O/W) | Doxycycline, Tetracycline, Minocycline | 99.75 | 62.86 | AM889121 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GDCHINON_17 | 1006 | 2685 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | PARTIALX | 94.32 | 88.11 | WP_000691721.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GDCHINON_3 | 1.0 | 0.0 | 1.0 |
| GDCHINON_4 | 0.0 | 1.0 | 0.0 |
| GDCHINON_5 | 1.0 | 0.0 | 1.0 |
| GDCHINON_6 | 0.0 | 1.0 | 0.0 |
| GDCHINON_7 | 0.0 | 1.0 | 0.0 |
| GDCHINON_8 | 0.0 | 1.0 | 0.0 |
| GDCHINON_9 | 0.0 | 1.0 | 0.0 |
| GDCHINON_10 | 0.0 | 1.0 | 0.0 |
| GDCHINON_11 | 1.0 | 0.0 | 1.0 |
| GDCHINON_12 | 0.0 | 1.0 | 0.0 |
| GDCHINON_13 | 0.0 | 1.0 | 0.0 |
| GDCHINON_14 | 0.0 | 1.0 | 0.0 |
| GDCHINON_15 | 0.0 | 1.0 | 0.0 |
| GDCHINON_16 | 0.0 | 1.0 | 0.0 |
| GDCHINON_17 | 0.0 | 1.0 | 0.0 |
| GDCHINON_18 | 0.0 | 1.0 | 0.0 |
| GDCHINON_19 | 0.0 | 1.0 | 0.0 |
| GDCHINON_20 | 0.0 | 1.0 | 0.0 |
| GDCHINON_21 | 0.0 | 1.0 | 0.0 |
| GDCHINON_22 | 0.0 | 1.0 | 0.0 |
| GDCHINON_23 | 1.0 | 0.0 | 1.0 |
| GDCHINON_24 | 0.0 | 1.0 | 0.0 |
| GDCHINON_25 | 0.0 | 1.0 | 0.0 |
| GDCHINON_26 | 0.0 | 1.0 | 0.0 |
| GDCHINON_27 | 0.0 | 1.0 | 0.0 |
| GDCHINON_28 | 0.0 | 1.0 | 0.0 |
| GDCHINON_29 | 0.0 | 1.0 | 0.0 |
| GDCHINON_30 | 1.0 | 0.0 | 1.0 |
| GDCHINON_31 | 0.0 | 1.0 | 0.0 |
| GDCHINON_32 | 0.0 | 1.0 | 0.0 |
| GDCHINON_34 | 0.0 | 1.0 | 0.0 |
| GDCHINON_35 | 0.0 | 1.0 | 0.0 |
| GDCHINON_36 | 0.0 | 1.0 | 0.0 |
| GDCHINON_37 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GDCHINON_8 | 50106 | 56818 | False | Siphoviridae | VOG0720, VOG4576, VOG4555, VOG4553, VOG0731, VOG3189, VOG2545 |
Phigaro v2.4.0 (Database: Jan. 2024 release)