Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 0 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FKGNBPFC_6 | 90 | 2009 | tet(W) | ARO:3000194 | tet(W) | 97.18 | 100.00 | AJ222769.3 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| FKGNBPFC_6 | 90 | 2009 | tet(W) | Doxycycline, Tetracycline, Minocycline | 99.11 | 100.00 | FN396364 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FKGNBPFC_6 | 93 | 2009 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | EXACTX | 100.00 | 100.00 | WP_000691721.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| FKGNBPFC_1 | 0.0 | 1.0 | 0.0 |
| FKGNBPFC_2 | 1.0 | 0.0 | 1.0 |
| FKGNBPFC_4 | 0.0 | 1.0 | 0.0 |
| FKGNBPFC_6 | 1.0 | 0.0 | 1.0 |
| FKGNBPFC_7 | 0.0 | 1.0 | 0.0 |
| FKGNBPFC_8 | 1.0 | 0.0 | 1.0 |
| FKGNBPFC_9 | 0.0 | 1.0 | 0.0 |
| FKGNBPFC_10 | 0.0 | 1.0 | 0.0 |
| FKGNBPFC_11 | 0.0 | 1.0 | 0.0 |
| FKGNBPFC_12 | 0.0 | 1.0 | 0.0 |
| FKGNBPFC_13 | 0.0 | 1.0 | 0.0 |
| FKGNBPFC_14 | 0.0 | 1.0 | 0.0 |
| FKGNBPFC_15 | 0.0 | 1.0 | 0.0 |
| FKGNBPFC_16 | 0.0 | 1.0 | 0.0 |
| FKGNBPFC_17 | 0.0 | 1.0 | 0.0 |
| FKGNBPFC_18 | 0.0 | 1.0 | 0.0 |
| FKGNBPFC_19 | 0.0 | 1.0 | 0.0 |
| FKGNBPFC_20 | 0.0 | 1.0 | 0.0 |
| FKGNBPFC_21 | 0.0 | 1.0 | 0.0 |
| FKGNBPFC_22 | 0.0 | 1.0 | 0.0 |
| FKGNBPFC_23 | 0.0 | 1.0 | 0.0 |
| FKGNBPFC_24 | 0.0 | 1.0 | 0.0 |
| FKGNBPFC_25 | 0.0 | 1.0 | 0.0 |
| FKGNBPFC_26 | 1.0 | 0.0 | 1.0 |
| FKGNBPFC_27 | 0.0 | 1.0 | 0.0 |
| FKGNBPFC_28 | 0.0 | 1.0 | 0.0 |
| FKGNBPFC_29 | 0.0 | 1.0 | 0.0 |
| FKGNBPFC_30 | 0.0 | 1.0 | 0.0 |
| FKGNBPFC_31 | 0.0 | 1.0 | 0.0 |
| FKGNBPFC_32 | 0.0 | 1.0 | 0.0 |
| FKGNBPFC_33 | 0.0 | 1.0 | 0.0 |
| FKGNBPFC_34 | 0.0 | 1.0 | 0.0 |
| FKGNBPFC_35 | 0.0 | 1.0 | 0.0 |
| FKGNBPFC_36 | 0.0 | 1.0 | 0.0 |
| FKGNBPFC_37 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| FKGNBPFC_24 | 42293 | 53459 | False | Siphoviridae | VOG4841, VOG4544, VOG4556, VOG4568, VOG5587, VOG5589, VOG5588, VOG5793 |
| FKGNBPFC_32 | 3984 | 12390 | False | Siphoviridae | VOG8271, VOG1227, VOG1243, VOG0226, VOG1309, VOG4600, VOG1563, VOG6495, VOG4602, VOG7656 |
Phigaro v2.4.0 (Database: Jan. 2024 release)