Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 7 | 0 | 1 | 7.07 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FOGHCPGP_1 | 3549914 | 3551119 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
| FOGHCPGP_1 | 2254542 | 2256467 | tet(Q) | ARO:3000191 | tet(Q) | 89.24 | 97.56 | Z21523.1 |
| FOGHCPGP_1 | 1305393 | 1306346 | CfxA2 | ARO:3003002 | CfxA2 | 98.44 | 98.75 | AF118110.1 |
| FOGHCPGP_2 | 441913 | 442866 | CfxA2 | ARO:3003002 | CfxA2 | 98.44 | 98.75 | AF118110.1 |
| FOGHCPGP_17 | 2954 | 3907 | CfxA2 | ARO:3003002 | CfxA2 | 98.44 | 98.75 | AF118110.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| FOGHCPGP_1 | 1305393 | 1306346 | cfxA3 | Ampicillin | 98.65 | 98.76 | AF472622 |
| FOGHCPGP_1 | 1305393 | 1306346 | cfxA4 | Unknown Beta-lactam | 98.65 | 98.76 | AY769933 |
| FOGHCPGP_1 | 1305393 | 1306346 | cfxA5 | Unknown Beta-lactam | 98.65 | 98.76 | AY769934 |
| FOGHCPGP_1 | 1305393 | 1306346 | cfxA | Cefoxitin, Ampicillin | 98.65 | 98.76 | U38243 |
| FOGHCPGP_1 | 2254542 | 2256467 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 90.50 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FOGHCPGP_1 | 3549380 | 3549889 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| FOGHCPGP_1 | 3549917 | 3551119 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
| FOGHCPGP_1 | 1305396 | 1306346 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 98.44 | 100.00 | WP_004339683.1 |
| FOGHCPGP_17 | 2957 | 3907 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 98.44 | 100.00 | WP_004339683.1 |
| FOGHCPGP_2 | 441916 | 442866 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 98.44 | 100.00 | WP_004339683.1 |
| FOGHCPGP_17 | 9499 | 10236 | cfxA | CfxA family broad-spectrum class A beta-lactamase | PARTIALX | 96.80 | 77.88 | WP_004339683.1 |
| FOGHCPGP_1 | 2254542 | 2256464 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.70 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| FOGHCPGP_1 | 1043579 | 1041999 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| FOGHCPGP_1 | 0.0 | 1.0 | 0.0 |
| FOGHCPGP_2 | 0.0 | 1.0 | 0.0 |
| FOGHCPGP_3 | 0.0 | 1.0 | 0.0 |
| FOGHCPGP_4 | 0.0 | 1.0 | 0.0 |
| FOGHCPGP_5 | 1.0 | 0.0 | 1.0 |
| FOGHCPGP_6 | 1.0 | 0.0 | 1.0 |
| FOGHCPGP_7 | 0.0 | 1.0 | 0.0 |
| FOGHCPGP_8 | 0.0 | 1.0 | 0.0 |
| FOGHCPGP_9 | 0.0 | 1.0 | 0.0 |
| FOGHCPGP_10 | 0.0 | 1.0 | 0.0 |
| FOGHCPGP_11 | 0.0 | 1.0 | 0.0 |
| FOGHCPGP_12 | 0.0 | 1.0 | 0.0 |
| FOGHCPGP_13 | 1.0 | 0.0 | 1.0 |
| FOGHCPGP_14 | 0.0 | 1.0 | 0.0 |
| FOGHCPGP_15 | 0.0 | 1.0 | 0.0 |
| FOGHCPGP_16 | 0.0 | 1.0 | 0.0 |
| FOGHCPGP_17 | 1.0 | 0.0 | 1.0 |
| FOGHCPGP_18 | 1.0 | 0.0 | 1.0 |
| FOGHCPGP_19 | 0.0 | 1.0 | 0.0 |
| FOGHCPGP_20 | 1.0 | 0.0 | 1.0 |
| FOGHCPGP_21 | 0.0 | 1.0 | 0.0 |
| FOGHCPGP_22 | 1.0 | 0.0 | 1.0 |
| FOGHCPGP_23 | 0.0 | 1.0 | 0.0 |
| FOGHCPGP_24 | 0.0 | 1.0 | 0.0 |
| FOGHCPGP_25 | 0.0 | 1.0 | 0.0 |
| FOGHCPGP_26 | 0.0 | 1.0 | 0.0 |
| FOGHCPGP_27 | 0.0 | 1.0 | 0.0 |
| FOGHCPGP_28 | 0.0 | 1.0 | 0.0 |
| FOGHCPGP_29 | 0.0 | 1.0 | 0.0 |
| FOGHCPGP_30 | 0.0 | 1.0 | 0.0 |
| FOGHCPGP_31 | 1.0 | 0.0 | 1.0 |
| FOGHCPGP_32 | 0.0 | 1.0 | 0.0 |
| FOGHCPGP_33 | 0.0 | 1.0 | 0.0 |
| FOGHCPGP_34 | 0.0 | 1.0 | 0.0 |
| FOGHCPGP_35 | 0.0 | 1.0 | 0.0 |
| FOGHCPGP_36 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| FOGHCPGP_1 | 14363 | 25274 | False | Siphoviridae | VOG8171, |
| FOGHCPGP_1 | 2233926 | 2241808 | True | Siphoviridae | VOG6282, |
Phigaro v2.4.0 (Database: Jan. 2024 release)