Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 13 | 10 | 4 | 16.88 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GGHOCBNH_1 | 2542725 | 2543579 | aadK | ARO:3002627 | aadK | 97.54 | 100.00 | AL009126.1 |
| GGHOCBNH_1 | 2523556 | 2524758 | blt | ARO:3003006 | blt | 99.75 | 100.00 | L32599.1 |
| GGHOCBNH_1 | 2296980 | 2298149 | bmr | ARO:3003007 | bmr | 99.74 | 100.00 | M33768.1 |
| GGHOCBNH_1 | 1328417 | 1328734 | ykkD | ARO:3003064 | ykkD | 99.05 | 100.00 | AL009126.1 |
| GGHOCBNH_1 | 1328079 | 1328417 | ykkC | ARO:3003063 | ykkC | 100.00 | 100.00 | AL009126.1 |
| GGHOCBNH_1 | 832030 | 834600 | Bacillus subtilis mprF | ARO:3003324 | Bsub_mprF | 99.77 | 100.00 | AL009126.3 |
| GGHOCBNH_1 | 532310 | 533953 | vmlR | ARO:3004476 | vmlR | 98.35 | 100.00 | NC_000964.3 |
| GGHOCBNH_1 | 228716 | 230149 | lmrB | ARO:3002813 | lmrB | 99.16 | 100.00 | JYFL01000006.1 |
| GGHOCBNH_1 | 215900 | 216820 | mphK | ARO:3004541 | mphK | 97.71 | 100.00 | CP010314.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GGHOCBNH_1 | 4024866 | 4026243 | tet(L) | Doxycycline, Tetracycline, Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.93 | 100.00 | X08034 |
| GGHOCBNH_1 | 2542727 | 2543579 | aadK | Streptomycin | 98.48 | 99.77 | M26879 |
| GGHOCBNH_1 | 215900 | 216820 | mph(K) | Spiramycin, Telithromycin | 97.50 | 100.00 | NC_000964 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GGHOCBNH_1 | 4025146 | 4026243 | tet(L) | tetracycline efflux MFS transporter Tet(L) | PARTIALX | 99.18 | 79.91 | WP_003242953.1 |
| GGHOCBNH_1 | 532313 | 533953 | vmlR | ABC-F type ribosomal protection protein VmlR | BLASTX | 98.35 | 100.00 | WP_003234144.1 |
| GGHOCBNH_1 | 215900 | 216817 | mphK | macrolide 2'-phosphotransferase MphK | BLASTX | 97.71 | 100.00 | WP_003246254.1 |
| GGHOCBNH_1 | 2542728 | 2543579 | aadK | aminoglycoside 6-adenylyltransferase AadK | BLASTX | 97.54 | 100.00 | WP_003229862.1 |
| GGHOCBNH_1 | 4022349 | 4022867 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 89.60 | 100.00 | WP_003242546.1 |
| GGHOCBNH_1 | 1992169 | 1994766 | rphC | rifamycin-inactivating phosphotransferase RphC | BLASTX | 81.40 | 100.00 | WP_087347987.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| GGHOCBNH_1 | 3531625 | 3532806 | capB | 0.0 | Capsule | Immune modulation | 99.66 | 100.00 | NP_391471 |
| GGHOCBNH_1 | 1945612 | 1947375 | dep/capD | 0.0 | Capsule | Immune modulation | 99.49 | 100.00 | NP_389723 |
| GGHOCBNH_1 | 2096810 | 2097451 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 99.38 | 100.00 | NP_390062 |
| GGHOCBNH_1 | 3118626 | 3119411 | dhbA | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.36 | 100.00 | NP_391080 |
| GGHOCBNH_1 | 3114790 | 3115728 | dhbB | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.36 | 100.00 | NP_391077 |
| GGHOCBNH_1 | 3117404 | 3118600 | dhbC | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.08 | 100.00 | NP_391079 |
| GGHOCBNH_1 | 3530000 | 3531142 | capA | 0.0 | Capsule | Immune modulation | 98.95 | 100.00 | NP_391469 |
| GGHOCBNH_1 | 3531161 | 3531610 | capC | 0.0 | Capsule | Immune modulation | 98.67 | 100.00 | NP_391470 |
| GGHOCBNH_1 | 3115756 | 3117375 | dhbE | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.52 | 100.00 | NP_391078 |
| GGHOCBNH_1 | 3107634 | 3114770 | dhbF | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 97.90 | 100.00 | NP_391076 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GGHOCBNH_1 | 87171 | 88307 | tufA | 0.0 | elongation factor Tu | 84.96 | 95.69 | AHM69299 |
| GGHOCBNH_1 | 866434 | 867303 | pdxS | 3.02e-149 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| GGHOCBNH_1 | 1639126 | 1639902 | CodY | 3.29e-124 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| GGHOCBNH_1 | 3370277 | 3370846 | ClpP | 2.44e-98 | part of proteolytic complex | 81.05 | 97.44 | BAB94595 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GGHOCBNH_1 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GGHOCBNH_1 | 1270814 | 1298267 | False | Myoviridae | VOG4602, VOG9667, VOG3490, VOG0189, VOG4861, VOG5447, VOG0796, VOG10227, VOG4773, VOG4685, VOG0749, VOG3890, VOG3891, VOG3892, VOG4545, VOG6163, VOG4865, VOG4885, VOG3894, VOG4550, VOG4691, VOG4862, VOG7718, VOG4705 |
| GGHOCBNH_1 | 2475044 | 2505190 | False | Myoviridae | VOG7718, VOG4862, VOG4691, VOG4550, VOG3894, VOG4885, VOG4865, VOG6163, VOG3892, VOG3891, VOG3890, VOG10055, VOG4870, VOG4589, VOG0749, VOG4685, VOG4688, VOG4773, VOG9315, VOG0796, VOG4673, VOG4693, VOG0189, VOG11060, VOG1309, VOG4600 |
Phigaro v2.4.0 (Database: Jan. 2024 release)