Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 0 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FMNCCNKH_35 | 2721 | 4640 | tet(W) | ARO:3000194 | tet(W) | 99.69 | 100.00 | AJ222769.3 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| FMNCCNKH_35 | 2721 | 4640 | tet(W) | Doxycycline, Tetracycline, Minocycline | 99.79 | 100.00 | AJ427422 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FMNCCNKH_35 | 2724 | 4640 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.69 | 100.00 | WP_002586627.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| FMNCCNKH_1 | 0.0 | 1.0 | 0.0 |
| FMNCCNKH_2 | 0.0 | 1.0 | 0.0 |
| FMNCCNKH_3 | 0.0 | 1.0 | 0.0 |
| FMNCCNKH_4 | 0.0 | 1.0 | 0.0 |
| FMNCCNKH_5 | 0.0 | 1.0 | 0.0 |
| FMNCCNKH_6 | 0.0 | 1.0 | 0.0 |
| FMNCCNKH_7 | 0.0 | 1.0 | 0.0 |
| FMNCCNKH_8 | 0.0 | 1.0 | 0.0 |
| FMNCCNKH_9 | 0.0 | 1.0 | 0.0 |
| FMNCCNKH_10 | 0.0 | 1.0 | 0.0 |
| FMNCCNKH_11 | 0.0 | 1.0 | 0.0 |
| FMNCCNKH_12 | 0.0 | 1.0 | 0.0 |
| FMNCCNKH_13 | 0.0 | 1.0 | 0.0 |
| FMNCCNKH_14 | 0.0 | 1.0 | 0.0 |
| FMNCCNKH_15 | 0.0 | 1.0 | 0.0 |
| FMNCCNKH_16 | 0.0 | 1.0 | 0.0 |
| FMNCCNKH_17 | 0.0 | 1.0 | 0.0 |
| FMNCCNKH_18 | 0.0 | 1.0 | 0.0 |
| FMNCCNKH_19 | 0.0 | 1.0 | 0.0 |
| FMNCCNKH_20 | 0.0 | 1.0 | 0.0 |
| FMNCCNKH_21 | 0.0 | 1.0 | 0.0 |
| FMNCCNKH_22 | 0.0 | 1.0 | 0.0 |
| FMNCCNKH_23 | 0.0 | 1.0 | 0.0 |
| FMNCCNKH_24 | 0.0 | 1.0 | 0.0 |
| FMNCCNKH_25 | 0.0 | 1.0 | 0.0 |
| FMNCCNKH_26 | 1.0 | 0.0 | 1.0 |
| FMNCCNKH_27 | 0.0 | 1.0 | 0.0 |
| FMNCCNKH_28 | 0.0 | 1.0 | 0.0 |
| FMNCCNKH_29 | 0.0 | 1.0 | 0.0 |
| FMNCCNKH_30 | 0.0 | 1.0 | 0.0 |
| FMNCCNKH_31 | 0.0 | 1.0 | 0.0 |
| FMNCCNKH_32 | 0.0 | 1.0 | 0.0 |
| FMNCCNKH_33 | 0.0 | 1.0 | 0.0 |
| FMNCCNKH_34 | 0.0 | 1.0 | 0.0 |
| FMNCCNKH_35 | 0.0 | 1.0 | 0.0 |
| FMNCCNKH_36 | 1.0 | 0.0 | 1.0 |
| FMNCCNKH_37 | 0.0 | 1.0 | 0.0 |
| FMNCCNKH_38 | 0.0 | 1.0 | 0.0 |
| FMNCCNKH_39 | 1.0 | 0.0 | 1.0 |
| FMNCCNKH_40 | 1.0 | 0.0 | 1.0 |
| FMNCCNKH_41 | 0.0 | 1.0 | 0.0 |
| FMNCCNKH_42 | 0.0 | 1.0 | 0.0 |
| FMNCCNKH_43 | 0.0 | 1.0 | 0.0 |
| FMNCCNKH_44 | 1.0 | 0.0 | 1.0 |
| FMNCCNKH_45 | 0.0 | 1.0 | 0.0 |
| FMNCCNKH_46 | 0.0 | 1.0 | 0.0 |
| FMNCCNKH_47 | 1.0 | 0.0 | 1.0 |
| FMNCCNKH_48 | 1.0 | 0.0 | 1.0 |
| FMNCCNKH_49 | 0.0 | 1.0 | 0.0 |
| FMNCCNKH_50 | 0.0 | 1.0 | 0.0 |
| FMNCCNKH_51 | 0.0 | 1.0 | 0.0 |
| FMNCCNKH_52 | 0.0 | 1.0 | 0.0 |
| FMNCCNKH_53 | 0.0 | 1.0 | 0.0 |
| FMNCCNKH_54 | 0.0 | 1.0 | 0.0 |
| FMNCCNKH_55 | 0.0 | 1.0 | 0.0 |
| FMNCCNKH_56 | 0.0 | 1.0 | 0.0 |
| FMNCCNKH_57 | 1.0 | 0.0 | 1.0 |
| FMNCCNKH_58 | 0.0 | 1.0 | 0.0 |
| FMNCCNKH_67 | 0.0 | 1.0 | 0.0 |
| FMNCCNKH_78 | 0.0 | 1.0 | 0.0 |
| FMNCCNKH_83 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| FMNCCNKH_1 | 498 | 22411 | False | Siphoviridae | VOG7168, |
| FMNCCNKH_1 | 332206 | 343747 | True | Unknown | VOG0221, |
| FMNCCNKH_2 | 89495 | 94270 | False | Siphoviridae | VOG4567, |
| FMNCCNKH_3 | 9490 | 10650 | False | Unknown | VOG2124, |
| FMNCCNKH_67 | 145399 | 150421 | True | Siphoviridae | VOG0944, |
Phigaro v2.4.0 (Database: Jan. 2024 release)