Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OMLNAJLE_40 | 1153 | 1647 | lnuC | ARO:3002837 | lnuC | 98.17 | 100.00 | AY928180.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| OMLNAJLE_7 | 16053 | 16791 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.86 | 100.00 | U18931 |
| OMLNAJLE_40 | 1153 | 1647 | lnu(C) | Lincomycin | 99.19 | 100.00 | AY928180 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OMLNAJLE_7 | 16258 | 16788 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | PARTIALX | 99.44 | 72.24 | WP_002292226.1 |
| OMLNAJLE_40 | 1153 | 1644 | lnu(C) | lincosamide nucleotidyltransferase Lnu(C) | BLASTX | 98.17 | 100.00 | WP_063851341.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OMLNAJLE_1 | 0.0 | 1.0 | 0.0 |
| OMLNAJLE_2 | 0.0 | 1.0 | 0.0 |
| OMLNAJLE_3 | 0.0 | 1.0 | 0.0 |
| OMLNAJLE_4 | 0.0 | 1.0 | 0.0 |
| OMLNAJLE_5 | 0.0 | 1.0 | 0.0 |
| OMLNAJLE_6 | 0.0 | 1.0 | 0.0 |
| OMLNAJLE_7 | 0.0 | 1.0 | 0.0 |
| OMLNAJLE_8 | 0.0 | 1.0 | 0.0 |
| OMLNAJLE_9 | 0.0 | 1.0 | 0.0 |
| OMLNAJLE_10 | 0.0 | 1.0 | 0.0 |
| OMLNAJLE_11 | 0.0 | 1.0 | 0.0 |
| OMLNAJLE_12 | 0.0 | 1.0 | 0.0 |
| OMLNAJLE_13 | 0.0 | 1.0 | 0.0 |
| OMLNAJLE_14 | 0.0 | 1.0 | 0.0 |
| OMLNAJLE_15 | 0.0 | 1.0 | 0.0 |
| OMLNAJLE_16 | 0.0 | 1.0 | 0.0 |
| OMLNAJLE_17 | 0.0 | 1.0 | 0.0 |
| OMLNAJLE_18 | 0.0 | 1.0 | 0.0 |
| OMLNAJLE_19 | 0.0 | 1.0 | 0.0 |
| OMLNAJLE_20 | 0.0 | 1.0 | 0.0 |
| OMLNAJLE_21 | 0.0 | 1.0 | 0.0 |
| OMLNAJLE_22 | 0.0 | 1.0 | 0.0 |
| OMLNAJLE_23 | 0.0 | 1.0 | 0.0 |
| OMLNAJLE_24 | 0.0 | 1.0 | 0.0 |
| OMLNAJLE_25 | 0.0 | 1.0 | 0.0 |
| OMLNAJLE_26 | 0.0 | 1.0 | 0.0 |
| OMLNAJLE_27 | 1.0 | 0.0 | 1.0 |
| OMLNAJLE_28 | 0.0 | 1.0 | 0.0 |
| OMLNAJLE_29 | 0.0 | 1.0 | 0.0 |
| OMLNAJLE_30 | 1.0 | 0.0 | 1.0 |
| OMLNAJLE_31 | 0.0 | 1.0 | 0.0 |
| OMLNAJLE_32 | 0.0 | 1.0 | 0.0 |
| OMLNAJLE_33 | 0.0 | 1.0 | 0.0 |
| OMLNAJLE_34 | 0.0 | 1.0 | 0.0 |
| OMLNAJLE_35 | 0.0 | 1.0 | 0.0 |
| OMLNAJLE_36 | 1.0 | 0.0 | 1.0 |
| OMLNAJLE_37 | 0.0 | 1.0 | 0.0 |
| OMLNAJLE_38 | 0.0 | 1.0 | 0.0 |
| OMLNAJLE_39 | 1.0 | 0.0 | 1.0 |
| OMLNAJLE_40 | 1.0 | 0.0 | 1.0 |
| OMLNAJLE_41 | 1.0 | 0.0 | 1.0 |
| OMLNAJLE_42 | 1.0 | 0.0 | 1.0 |
| OMLNAJLE_43 | 1.0 | 0.0 | 1.0 |
| OMLNAJLE_44 | 1.0 | 0.0 | 1.0 |
| OMLNAJLE_45 | 0.0 | 1.0 | 0.0 |
| OMLNAJLE_46 | 0.0 | 1.0 | 0.0 |
| OMLNAJLE_47 | 0.0 | 1.0 | 0.0 |
| OMLNAJLE_48 | 0.0 | 1.0 | 0.0 |
| OMLNAJLE_49 | 1.0 | 0.0 | 1.0 |
| OMLNAJLE_56 | 0.0 | 1.0 | 0.0 |
| OMLNAJLE_60 | 0.0 | 1.0 | 0.0 |
| OMLNAJLE_61 | 0.0 | 1.0 | 0.0 |
| OMLNAJLE_62 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OMLNAJLE_1 | 128866 | 130969 | False | Siphoviridae | VOG9667, |
| OMLNAJLE_7 | 65056 | 74537 | True | Myoviridae | / |
| OMLNAJLE_10 | 16827 | 50650 | False | Myoviridae | VOG11072, |
| OMLNAJLE_23 | 74742 | 81570 | True | Siphoviridae | VOG6396, |
Phigaro v2.4.0 (Database: Jan. 2024 release)