Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DAKFFJCC_3 | 15046 | 16965 | tet(W) | ARO:3000194 | tet(W) | 97.50 | 100.00 | AJ222769.3 |
| DAKFFJCC_3 | 13403 | 14623 | tet(40) | ARO:3000567 | tet(40) | 99.51 | 100.00 | AM419751.1 |
| DAKFFJCC_27 | 5437 | 6174 | ErmB | ARO:3000375 | ErmB | 99.18 | 98.79 | AF242872.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| DAKFFJCC_27 | 5437 | 6174 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | X72021 |
| DAKFFJCC_3 | 13403 | 14623 | tet(40) | Doxycycline, Tetracycline | 99.84 | 100.00 | AM419751 |
| DAKFFJCC_3 | 15046 | 16965 | tet(W) | Doxycycline, Tetracycline, Minocycline | 98.12 | 100.00 | FN396364 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DAKFFJCC_27 | 5437 | 6171 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | EXACTX | 100.00 | 100.00 | WP_001038795.1 |
| DAKFFJCC_3 | 13406 | 14623 | tet(40) | tetracycline efflux MFS transporter Tet(40) | BLASTX | 99.75 | 100.00 | WP_015573055.1 |
| DAKFFJCC_3 | 15049 | 16965 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 97.97 | 100.00 | WP_050618045.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DAKFFJCC_1 | 0.0 | 1.0 | 0.0 |
| DAKFFJCC_2 | 0.0 | 1.0 | 0.0 |
| DAKFFJCC_3 | 0.0 | 1.0 | 0.0 |
| DAKFFJCC_4 | 0.0 | 1.0 | 0.0 |
| DAKFFJCC_5 | 0.0 | 1.0 | 0.0 |
| DAKFFJCC_6 | 0.0 | 1.0 | 0.0 |
| DAKFFJCC_7 | 0.0 | 1.0 | 0.0 |
| DAKFFJCC_8 | 0.0 | 1.0 | 0.0 |
| DAKFFJCC_9 | 0.0 | 1.0 | 0.0 |
| DAKFFJCC_10 | 0.0 | 1.0 | 0.0 |
| DAKFFJCC_11 | 0.0 | 1.0 | 0.0 |
| DAKFFJCC_12 | 0.0 | 1.0 | 0.0 |
| DAKFFJCC_13 | 0.0 | 1.0 | 0.0 |
| DAKFFJCC_14 | 0.0 | 1.0 | 0.0 |
| DAKFFJCC_15 | 0.0 | 1.0 | 0.0 |
| DAKFFJCC_16 | 0.0 | 1.0 | 0.0 |
| DAKFFJCC_17 | 0.0 | 1.0 | 0.0 |
| DAKFFJCC_18 | 0.0 | 1.0 | 0.0 |
| DAKFFJCC_19 | 0.0 | 1.0 | 0.0 |
| DAKFFJCC_20 | 0.0 | 1.0 | 0.0 |
| DAKFFJCC_21 | 0.0 | 1.0 | 0.0 |
| DAKFFJCC_22 | 1.0 | 0.0 | 1.0 |
| DAKFFJCC_23 | 0.0 | 1.0 | 0.0 |
| DAKFFJCC_24 | 1.0 | 0.0 | 1.0 |
| DAKFFJCC_25 | 0.0 | 1.0 | 0.0 |
| DAKFFJCC_26 | 0.0 | 1.0 | 0.0 |
| DAKFFJCC_27 | 0.0 | 1.0 | 0.0 |
| DAKFFJCC_28 | 0.0 | 1.0 | 0.0 |
| DAKFFJCC_29 | 1.0 | 0.0 | 1.0 |
| DAKFFJCC_30 | 0.0 | 1.0 | 0.0 |
| DAKFFJCC_31 | 0.0 | 1.0 | 0.0 |
| DAKFFJCC_32 | 0.0 | 1.0 | 0.0 |
| DAKFFJCC_33 | 0.0 | 1.0 | 0.0 |
| DAKFFJCC_34 | 0.0 | 1.0 | 0.0 |
| DAKFFJCC_35 | 0.0 | 1.0 | 0.0 |
| DAKFFJCC_36 | 1.0 | 0.0 | 1.0 |
| DAKFFJCC_37 | 1.0 | 0.0 | 1.0 |
| DAKFFJCC_38 | 1.0 | 0.0 | 1.0 |
| DAKFFJCC_39 | 1.0 | 0.0 | 1.0 |
| DAKFFJCC_40 | 1.0 | 0.0 | 1.0 |
| DAKFFJCC_41 | 1.0 | 0.0 | 1.0 |
| DAKFFJCC_42 | 0.0 | 1.0 | 0.0 |
| DAKFFJCC_43 | 1.0 | 0.0 | 1.0 |
| DAKFFJCC_44 | 1.0 | 0.0 | 1.0 |
| DAKFFJCC_45 | 0.0 | 1.0 | 0.0 |
| DAKFFJCC_46 | 1.0 | 0.0 | 1.0 |
| DAKFFJCC_56 | 0.0 | 1.0 | 0.0 |
| DAKFFJCC_59 | 0.0 | 1.0 | 0.0 |
| DAKFFJCC_60 | 0.0 | 1.0 | 0.0 |
| DAKFFJCC_61 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DAKFFJCC_8 | 23188 | 34148 | False | Myoviridae | VOG4573, |
Phigaro v2.4.0 (Database: Jan. 2024 release)