Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| ABELELME_1 | 237934 | 237230 | WalR | 2.87e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| ABELELME_23 | 13905 | 14102 | CspR | 2.41e-33 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| ABELELME_1 | 382436 | 383494 | repUS75 | 1059 / 1059 | 100.00 | CP002393 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| ABELELME_1 | 0.0 | 1.0 | 0.0 |
| ABELELME_2 | 0.0 | 1.0 | 0.0 |
| ABELELME_3 | 0.0 | 1.0 | 0.0 |
| ABELELME_4 | 0.0 | 1.0 | 0.0 |
| ABELELME_5 | 0.0 | 1.0 | 0.0 |
| ABELELME_6 | 0.0 | 1.0 | 0.0 |
| ABELELME_7 | 0.0 | 1.0 | 0.0 |
| ABELELME_8 | 0.0 | 1.0 | 0.0 |
| ABELELME_9 | 0.0 | 1.0 | 0.0 |
| ABELELME_10 | 0.0 | 1.0 | 0.0 |
| ABELELME_11 | 0.0 | 1.0 | 0.0 |
| ABELELME_12 | 0.0 | 1.0 | 0.0 |
| ABELELME_13 | 0.0 | 1.0 | 0.0 |
| ABELELME_14 | 0.0 | 1.0 | 0.0 |
| ABELELME_15 | 0.0 | 1.0 | 0.0 |
| ABELELME_16 | 0.0 | 1.0 | 0.0 |
| ABELELME_17 | 0.0 | 1.0 | 0.0 |
| ABELELME_18 | 0.0 | 1.0 | 0.0 |
| ABELELME_19 | 0.0 | 1.0 | 0.0 |
| ABELELME_20 | 0.0 | 1.0 | 0.0 |
| ABELELME_21 | 0.0 | 1.0 | 0.0 |
| ABELELME_22 | 0.0 | 1.0 | 0.0 |
| ABELELME_23 | 0.0 | 1.0 | 0.0 |
| ABELELME_24 | 0.0 | 1.0 | 0.0 |
| ABELELME_25 | 0.0 | 1.0 | 0.0 |
| ABELELME_26 | 1.0 | 0.0 | 1.0 |
| ABELELME_27 | 0.0 | 1.0 | 0.0 |
| ABELELME_28 | 1.0 | 0.0 | 1.0 |
| ABELELME_29 | 0.0 | 1.0 | 0.0 |
| ABELELME_30 | 0.0 | 1.0 | 0.0 |
| ABELELME_31 | 0.0 | 1.0 | 0.0 |
| ABELELME_32 | 0.0 | 1.0 | 0.0 |
| ABELELME_33 | 0.0 | 1.0 | 0.0 |
| ABELELME_34 | 0.0 | 1.0 | 0.0 |
| ABELELME_35 | 0.0 | 1.0 | 0.0 |
| ABELELME_36 | 0.0 | 1.0 | 0.0 |
| ABELELME_37 | 0.0 | 1.0 | 0.0 |
| ABELELME_38 | 0.0 | 1.0 | 0.0 |
| ABELELME_39 | 0.0 | 1.0 | 0.0 |
| ABELELME_40 | 0.0 | 1.0 | 0.0 |
| ABELELME_41 | 1.0 | 0.0 | 1.0 |
| ABELELME_42 | 1.0 | 0.0 | 1.0 |
| ABELELME_43 | 1.0 | 0.0 | 1.0 |
| ABELELME_44 | 1.0 | 0.0 | 1.0 |
| ABELELME_45 | 0.0 | 1.0 | 0.0 |
| ABELELME_46 | 1.0 | 0.0 | 1.0 |
| ABELELME_48 | 0.0 | 1.0 | 0.0 |
| ABELELME_49 | 0.0 | 1.0 | 0.0 |
| ABELELME_50 | 1.0 | 0.0 | 1.0 |
| ABELELME_51 | 1.0 | 0.0 | 1.0 |
| ABELELME_52 | 1.0 | 0.0 | 1.0 |
| ABELELME_53 | 1.0 | 0.0 | 1.0 |
| ABELELME_54 | 0.0 | 1.0 | 0.0 |
| ABELELME_55 | 1.0 | 0.0 | 1.0 |
| ABELELME_56 | 0.0 | 1.0 | 0.0 |
| ABELELME_57 | 0.0 | 1.0 | 0.0 |
| ABELELME_58 | 1.0 | 0.0 | 1.0 |
| ABELELME_59 | 1.0 | 0.0 | 1.0 |
| ABELELME_60 | 1.0 | 0.0 | 1.0 |
| ABELELME_61 | 1.0 | 0.0 | 1.0 |
| ABELELME_62 | 1.0 | 0.0 | 1.0 |
| ABELELME_63 | 1.0 | 0.0 | 1.0 |
| ABELELME_64 | 0.0 | 1.0 | 0.0 |
| ABELELME_65 | 1.0 | 0.0 | 1.0 |
| ABELELME_66 | 1.0 | 0.0 | 1.0 |
| ABELELME_67 | 0.0 | 1.0 | 0.0 |
| ABELELME_68 | 1.0 | 0.0 | 1.0 |
| ABELELME_69 | 1.0 | 0.0 | 1.0 |
| ABELELME_70 | 1.0 | 0.0 | 1.0 |
| ABELELME_71 | 1.0 | 0.0 | 1.0 |
| ABELELME_72 | 1.0 | 0.0 | 1.0 |
| ABELELME_73 | 1.0 | 0.0 | 1.0 |
| ABELELME_74 | 1.0 | 0.0 | 1.0 |
| ABELELME_75 | 1.0 | 0.0 | 1.0 |
| ABELELME_78 | 0.0 | 1.0 | 0.0 |
| ABELELME_85 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| ABELELME_12 | 54569 | 61117 | False | Siphoviridae | VOG4568, VOG4556, VOG5051, VOG4544, VOG4581, VOG4841, VOG0205 |
| ABELELME_23 | 33604 | 43673 | False | Unknown | VOG9667, VOG6495, VOG1333, VOG4965, VOG6179, VOG11003, VOG11003, VOG6495, VOG7236, VOG8241, VOG1309, VOG0186, VOG4566, VOG0189 |
| ABELELME_23 | 45246 | 71129 | False | Siphoviridae | VOG3307, VOG0198, VOG4570, VOG3699, VOG4544, VOG0720, VOG4564, VOG5616, VOG1300, VOG4555, VOG3434, VOG1887, VOG4713, VOG0723, VOG5660, VOG0724, VOG0799, VOG0725, VOG0800, VOG4545, VOG4605, VOG4599, VOG4705, VOG1637, VOG0703, VOG4918, VOG4605 |
Phigaro v2.4.0 (Database: Jan. 2024 release)