Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 0 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HGMEMGFC_2 | 78396 | 78890 | dfrF | ARO:3002867 | dfrF | 100.00 | 100.00 | AF028812.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HGMEMGFC_2 | 78399 | 78890 | dfrF | trimethoprim-resistant dihydrofolate reductase DfrF | EXACTX | 100.00 | 100.00 | WP_002322211.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HGMEMGFC_1 | 0.0 | 1.0 | 0.0 |
| HGMEMGFC_2 | 0.0 | 1.0 | 0.0 |
| HGMEMGFC_3 | 0.0 | 1.0 | 0.0 |
| HGMEMGFC_4 | 0.0 | 1.0 | 0.0 |
| HGMEMGFC_5 | 1.0 | 0.0 | 1.0 |
| HGMEMGFC_6 | 0.0 | 1.0 | 0.0 |
| HGMEMGFC_7 | 1.0 | 0.0 | 1.0 |
| HGMEMGFC_8 | 0.0 | 1.0 | 0.0 |
| HGMEMGFC_9 | 1.0 | 0.0 | 1.0 |
| HGMEMGFC_11 | 1.0 | 0.0 | 1.0 |
| HGMEMGFC_12 | 0.0 | 1.0 | 0.0 |
| HGMEMGFC_13 | 0.0 | 1.0 | 0.0 |
| HGMEMGFC_14 | 0.0 | 1.0 | 0.0 |
| HGMEMGFC_15 | 0.0 | 1.0 | 0.0 |
| HGMEMGFC_16 | 1.0 | 0.0 | 1.0 |
| HGMEMGFC_18 | 0.0 | 1.0 | 0.0 |
| HGMEMGFC_19 | 0.0 | 1.0 | 0.0 |
| HGMEMGFC_20 | 0.0 | 1.0 | 0.0 |
| HGMEMGFC_21 | 0.0 | 1.0 | 0.0 |
| HGMEMGFC_22 | 0.0 | 1.0 | 0.0 |
| HGMEMGFC_23 | 0.0 | 1.0 | 0.0 |
| HGMEMGFC_24 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HGMEMGFC_23 | 41430 | 60975 | False | Siphoviridae | VOG0275, VOG0713, VOG2624, VOG4545, VOG9762, VOG9762, VOG4621, VOG1159, VOG1158, VOG1210, VOG8134, VOG4553, VOG4568, VOG4556, VOG4544, VOG0296 |
| HGMEMGFC_23 | 63204 | 69081 | False | Siphoviridae | VOG4636, VOG9438, VOG1243, VOG0226, VOG1309, VOG1309, VOG4600 |
Phigaro v2.4.0 (Database: Jan. 2024 release)