Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 0 | 5.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GNEHDEKP_45 | 68949 | 69857 | CblA-1 | ARO:3002999 | CblA-1 | 97.97 | 102.03 | GQ343019.1 |
| GNEHDEKP_5 | 40332 | 42257 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| GNEHDEKP_27 | 1386 | 2201 | sul2 | ARO:3000412 | sul2 | 100.00 | 100.00 | AY055428.1 |
| GNEHDEKP_32 | 1100 | 1924 | OXA-347 | ARO:3001777 | OXA-347 | 100.00 | 100.00 | JN086160.1 |
| GNEHDEKP_32 | 97 | 897 | ErmF | ARO:3000498 | ErmF | 98.50 | 100.00 | M17124.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GNEHDEKP_32 | 1100 | 1924 | blaOXA-347 | Unknown Beta-lactam | 100.00 | 100.00 | ACWG01000053 |
| GNEHDEKP_27 | 1386 | 2201 | sul2 | Sulfamethoxazole | 100.00 | 100.00 | AY034138 |
| GNEHDEKP_5 | 40332 | 42257 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| GNEHDEKP_32 | 97 | 897 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GNEHDEKP_32 | 1103 | 1924 | blaOXA-347 | class D beta-lactamase OXA-347 | ALLELEX | 100.00 | 100.00 | WP_004295324.1 |
| GNEHDEKP_27 | 1389 | 2201 | sul2 | sulfonamide-resistant dihydropteroate synthase Sul2 | EXACTX | 100.00 | 100.00 | WP_001043260.1 |
| GNEHDEKP_5 | 40332 | 42254 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| GNEHDEKP_32 | 97 | 894 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
| GNEHDEKP_45 | 68949 | 69836 | cblA | CblA family class A beta-lactamase | BLASTX | 97.97 | 100.00 | WP_005827792.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GNEHDEKP_1 | 0.0 | 1.0 | 0.0 |
| GNEHDEKP_2 | 0.0 | 1.0 | 0.0 |
| GNEHDEKP_3 | 0.0 | 1.0 | 0.0 |
| GNEHDEKP_4 | 0.0 | 1.0 | 0.0 |
| GNEHDEKP_5 | 0.0 | 1.0 | 0.0 |
| GNEHDEKP_6 | 0.0 | 1.0 | 0.0 |
| GNEHDEKP_7 | 0.0 | 1.0 | 0.0 |
| GNEHDEKP_8 | 0.0 | 1.0 | 0.0 |
| GNEHDEKP_9 | 0.0 | 1.0 | 0.0 |
| GNEHDEKP_10 | 0.0 | 1.0 | 0.0 |
| GNEHDEKP_11 | 0.0 | 1.0 | 0.0 |
| GNEHDEKP_12 | 0.0 | 1.0 | 0.0 |
| GNEHDEKP_13 | 0.0 | 1.0 | 0.0 |
| GNEHDEKP_14 | 0.0 | 1.0 | 0.0 |
| GNEHDEKP_15 | 0.0 | 1.0 | 0.0 |
| GNEHDEKP_16 | 1.0 | 0.0 | 1.0 |
| GNEHDEKP_17 | 0.0 | 1.0 | 0.0 |
| GNEHDEKP_18 | 0.0 | 1.0 | 0.0 |
| GNEHDEKP_19 | 0.0 | 1.0 | 0.0 |
| GNEHDEKP_20 | 0.0 | 1.0 | 0.0 |
| GNEHDEKP_21 | 0.0 | 1.0 | 0.0 |
| GNEHDEKP_22 | 0.0 | 1.0 | 0.0 |
| GNEHDEKP_23 | 0.0 | 1.0 | 0.0 |
| GNEHDEKP_24 | 0.0 | 1.0 | 0.0 |
| GNEHDEKP_25 | 1.0 | 0.0 | 1.0 |
| GNEHDEKP_26 | 1.0 | 0.0 | 1.0 |
| GNEHDEKP_27 | 1.0 | 0.0 | 1.0 |
| GNEHDEKP_28 | 1.0 | 0.0 | 1.0 |
| GNEHDEKP_29 | 0.0 | 1.0 | 0.0 |
| GNEHDEKP_30 | 1.0 | 0.0 | 1.0 |
| GNEHDEKP_31 | 1.0 | 0.0 | 1.0 |
| GNEHDEKP_32 | 1.0 | 0.0 | 1.0 |
| GNEHDEKP_33 | 1.0 | 0.0 | 1.0 |
| GNEHDEKP_34 | 0.0 | 1.0 | 0.0 |
| GNEHDEKP_35 | 0.0 | 1.0 | 0.0 |
| GNEHDEKP_36 | 1.0 | 0.0 | 1.0 |
| GNEHDEKP_37 | 0.0 | 1.0 | 0.0 |
| GNEHDEKP_38 | 0.0 | 1.0 | 0.0 |
| GNEHDEKP_39 | 1.0 | 0.0 | 1.0 |
| GNEHDEKP_40 | 1.0 | 0.0 | 1.0 |
| GNEHDEKP_41 | 0.0 | 1.0 | 0.0 |
| GNEHDEKP_45 | 0.0 | 1.0 | 0.0 |
| GNEHDEKP_56 | 0.0 | 1.0 | 0.0 |
| GNEHDEKP_60 | 0.0 | 1.0 | 0.0 |
| GNEHDEKP_61 | 0.0 | 1.0 | 0.0 |
| GNEHDEKP_62 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GNEHDEKP_12 | 35924 | 42763 | True | Siphoviridae | VOG0275, |
Phigaro v2.4.0 (Database: Jan. 2024 release)