Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GACHBOMO_1 | 1237751 | 1239670 | tet(O) | ARO:3000190 | tet(O) | 99.37 | 100.00 | M18896.2 |
| GACHBOMO_1 | 916866 | 920498 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 91.30 | 102.02 | NC_008618.1 |
| GACHBOMO_2 | 525406 | 528732 | Bifidobacterium bifidum ileS conferring resistance to mupirocin | ARO:3003730 | Bbif_ileS_MUP | 99.64 | 100.09 | CP001840.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GACHBOMO_1 | 1237751 | 1239670 | tet(O) | Doxycycline, Tetracycline, Minocycline | 99.79 | 100.00 | M18896 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GACHBOMO_1 | 1237754 | 1239670 | tet(O) | tetracycline resistance ribosomal protection protein Tet(O) | EXACTX | 100.00 | 100.00 | WP_050824634.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GACHBOMO_1 | 0.0 | 1.0 | 0.0 |
| GACHBOMO_2 | 0.0 | 1.0 | 0.0 |
| GACHBOMO_3 | 0.0 | 1.0 | 0.0 |
| GACHBOMO_4 | 1.0 | 0.0 | 1.0 |
| GACHBOMO_5 | 0.0 | 1.0 | 0.0 |
| GACHBOMO_6 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GACHBOMO_1 | 63698 | 83773 | True | Siphoviridae | VOG0275, VOG4602, VOG0275, VOG4585, VOG3479, VOG3622, VOG0944, VOG5532, VOG8440, VOG2090, VOG11075, VOG0585, VOG3304, VOG0010, VOG4602 |
| GACHBOMO_3 | 13445 | 36356 | False | Myoviridae | VOG2484, VOG0384, VOG4548, VOG11016, VOG5689, VOG0382, VOG0052, VOG0052, VOG8190, VOG2090, VOG5012 |
| GACHBOMO_4 | 17891 | 31208 | False | Myoviridae | VOG1085, VOG0444, VOG0705, VOG7442, VOG0705, VOG2577, VOG0021 |
| GACHBOMO_4 | 50809 | 57033 | False | Siphoviridae | VOG4679, VOG5774, VOG3189, VOG2545, VOG9667 |
Phigaro v2.4.0 (Database: Jan. 2024 release)