Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GAMIOLLD_10 | 470611 | 473937 | Bifidobacterium bifidum ileS conferring resistance to mupirocin | ARO:3003730 | Bbif_ileS_MUP | 99.82 | 100.09 | CP001840.1 |
| GAMIOLLD_1 | 469392 | 473024 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 91.30 | 102.02 | NC_008618.1 |
| GAMIOLLD_12 | 310678 | 312363 | tet(O) | ARO:3000190 | tet(O) | 99.47 | 87.79 | M18896.2 |
| GAMIOLLD_5 | 210 | 1064 | ErmX | ARO:3000596 | ErmX | 90.14 | 100.00 | M36726.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GAMIOLLD_12 | 310678 | 312377 | tet(O) | Doxycycline, Tetracycline, Minocycline | 99.82 | 88.54 | M18896 |
| GAMIOLLD_5 | 210 | 972 | erm(X) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.74 | 100.00 | U21300 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GAMIOLLD_12 | 310681 | 312375 | tet(O) | tetracycline resistance ribosomal protection protein Tet(O) | PARTIALX | 100.00 | 88.42 | WP_050824634.1 |
| GAMIOLLD_5 | 210 | 1061 | erm(X) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(X) | BLASTX | 99.65 | 100.00 | WP_011117480.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GAMIOLLD_1 | 0.0 | 1.0 | 0.0 |
| GAMIOLLD_2 | 0.0 | 1.0 | 0.0 |
| GAMIOLLD_3 | 0.0 | 1.0 | 0.0 |
| GAMIOLLD_4 | 0.0 | 1.0 | 0.0 |
| GAMIOLLD_5 | 0.0 | 1.0 | 0.0 |
| GAMIOLLD_6 | 0.0 | 1.0 | 0.0 |
| GAMIOLLD_7 | 1.0 | 0.0 | 1.0 |
| GAMIOLLD_8 | 1.0 | 0.0 | 1.0 |
| GAMIOLLD_9 | 1.0 | 0.0 | 1.0 |
| GAMIOLLD_10 | 0.0 | 1.0 | 0.0 |
| GAMIOLLD_11 | 0.0 | 1.0 | 0.0 |
| GAMIOLLD_12 | 0.0 | 1.0 | 0.0 |
| GAMIOLLD_13 | 0.0 | 1.0 | 0.0 |
| GAMIOLLD_14 | 0.0 | 1.0 | 0.0 |
| GAMIOLLD_15 | 0.0 | 1.0 | 0.0 |
| GAMIOLLD_16 | 0.0 | 1.0 | 0.0 |
| GAMIOLLD_17 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GAMIOLLD_11 | 362680 | 368506 | False | Siphoviridae | VOG5395, VOG4602, VOG0010, VOG3304, VOG0585 |
| GAMIOLLD_13 | 105430 | 129670 | False | Myoviridae | VOG2090, VOG8190, VOG0052, VOG0382, VOG5689, VOG4548, VOG0384, VOG2484, VOG0085 |
Phigaro v2.4.0 (Database: Jan. 2024 release)