Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HIHIGOHH_97 | 5577 | 6377 | ErmF | ARO:3000498 | ErmF | 98.50 | 100.00 | M17124.1 |
| HIHIGOHH_96 | 55 | 1020 | CfxA3 | ARO:3003003 | CfxA3 | 100.00 | 100.00 | AF472622.2 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| HIHIGOHH_96 | 55 | 1020 | cfxA3 | Ampicillin | 100.00 | 100.00 | AF472622 |
| HIHIGOHH_97 | 5577 | 6377 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HIHIGOHH_96 | 55 | 1017 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | EXACTX | 100.00 | 100.00 | WP_004348227.1 |
| HIHIGOHH_97 | 5580 | 6377 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HIHIGOHH_1 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_2 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_3 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_4 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_5 | 1.0 | 0.0 | 1.0 |
| HIHIGOHH_6 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_7 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_8 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_9 | 1.0 | 0.0 | 1.0 |
| HIHIGOHH_10 | 1.0 | 0.0 | 1.0 |
| HIHIGOHH_11 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_12 | 1.0 | 0.0 | 1.0 |
| HIHIGOHH_13 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_14 | 1.0 | 0.0 | 1.0 |
| HIHIGOHH_15 | 1.0 | 0.0 | 1.0 |
| HIHIGOHH_16 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_17 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_18 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_19 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_20 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_21 | 1.0 | 0.0 | 1.0 |
| HIHIGOHH_22 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_23 | 1.0 | 0.0 | 1.0 |
| HIHIGOHH_24 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_25 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_26 | 1.0 | 0.0 | 1.0 |
| HIHIGOHH_35 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_45 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_46 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_47 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_48 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_49 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_50 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_51 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_52 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_53 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_54 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_55 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_56 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_57 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_58 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_59 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_60 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_61 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_62 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_63 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_64 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_65 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_66 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_67 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_68 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_69 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_70 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_71 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_72 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_73 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_74 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_75 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_76 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_77 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_78 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_79 | 1.0 | 0.0 | 1.0 |
| HIHIGOHH_80 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_81 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_82 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_83 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_84 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_85 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_86 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_87 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_88 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_89 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_90 | 1.0 | 0.0 | 1.0 |
| HIHIGOHH_91 | 1.0 | 0.0 | 1.0 |
| HIHIGOHH_92 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_93 | 1.0 | 0.0 | 1.0 |
| HIHIGOHH_94 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_95 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_96 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_97 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_98 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_99 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_100 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_101 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_102 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_103 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_104 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_105 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_106 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_107 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_108 | 1.0 | 0.0 | 1.0 |
| HIHIGOHH_109 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_110 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_111 | 1.0 | 0.0 | 1.0 |
| HIHIGOHH_112 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_113 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_114 | 1.0 | 0.0 | 1.0 |
| HIHIGOHH_115 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_116 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_117 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_118 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_119 | 1.0 | 0.0 | 1.0 |
| HIHIGOHH_120 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_121 | 1.0 | 0.0 | 1.0 |
| HIHIGOHH_122 | 1.0 | 0.0 | 1.0 |
| HIHIGOHH_123 | 1.0 | 0.0 | 1.0 |
| HIHIGOHH_124 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_125 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_126 | 1.0 | 0.0 | 1.0 |
| HIHIGOHH_127 | 1.0 | 0.0 | 1.0 |
| HIHIGOHH_128 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_129 | 1.0 | 0.0 | 1.0 |
| HIHIGOHH_130 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_131 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_132 | 1.0 | 0.0 | 1.0 |
| HIHIGOHH_133 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_134 | 1.0 | 0.0 | 1.0 |
| HIHIGOHH_135 | 0.0 | 1.0 | 0.0 |
| HIHIGOHH_136 | 1.0 | 0.0 | 1.0 |
| HIHIGOHH_137 | 1.0 | 0.0 | 1.0 |
| HIHIGOHH_138 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HIHIGOHH_51 | 42615 | 52228 | False | Unknown | VOG4573, |
| HIHIGOHH_53 | 26951 | 39565 | False | Unknown | VOG5095, |
Phigaro v2.4.0 (Database: Jan. 2024 release)