Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DNEGABKI_1 | 460450 | 464133 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 91.30 | 103.46 | NC_008618.1 |
| DNEGABKI_12 | 22256 | 25582 | Bifidobacterium bifidum ileS conferring resistance to mupirocin | ARO:3003730 | Bbif_ileS_MUP | 99.64 | 100.09 | CP001840.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| DNEGABKI_1 | 474562 | 476482 | tet(W) | Doxycycline, Tetracycline, Minocycline | 99.90 | 100.00 | AJ427422 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DNEGABKI_1 | 474565 | 475776 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | PARTIALX | 98.02 | 63.22 | WP_002586627.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DNEGABKI_1 | 0.0 | 1.0 | 0.0 |
| DNEGABKI_2 | 0.0 | 1.0 | 0.0 |
| DNEGABKI_3 | 0.0 | 1.0 | 0.0 |
| DNEGABKI_4 | 0.0 | 1.0 | 0.0 |
| DNEGABKI_5 | 1.0 | 0.0 | 1.0 |
| DNEGABKI_6 | 0.0 | 1.0 | 0.0 |
| DNEGABKI_8 | 0.0 | 1.0 | 0.0 |
| DNEGABKI_9 | 0.0 | 1.0 | 0.0 |
| DNEGABKI_10 | 0.0 | 1.0 | 0.0 |
| DNEGABKI_11 | 0.0 | 1.0 | 0.0 |
| DNEGABKI_12 | 0.0 | 1.0 | 0.0 |
| DNEGABKI_13 | 0.0 | 1.0 | 0.0 |
| DNEGABKI_14 | 1.0 | 0.0 | 1.0 |
| DNEGABKI_15 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DNEGABKI_8 | 142817 | 158896 | False | Siphoviridae | VOG4544, VOG4556, VOG4568, VOG5587, VOG5589, VOG5588, VOG5793, VOG9569, VOG9570, VOG4194, VOG0136, VOG0275, VOG2215, VOG0267 |
| DNEGABKI_13 | 26300 | 33855 | False | Myoviridae / Podoviridae | VOG5689, VOG0382, VOG0052, VOG8190 |
| DNEGABKI_15 | 35889 | 40283 | False | Siphoviridae | VOG4602, VOG0010, VOG3304, VOG0585 |
Phigaro v2.4.0 (Database: Jan. 2024 release)