Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 0 | 5.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GEGBNCDM_1 | 346683 | 348608 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| GEGBNCDM_12 | 325956 | 327161 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
| GEGBNCDM_5 | 137827 | 138717 | CblA-1 | ARO:3002999 | CblA-1 | 99.32 | 100.00 | GQ343019.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GEGBNCDM_1 | 346683 | 348608 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| GEGBNCDM_23 | 124051 | 124847 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 91.47 | 99.50 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GEGBNCDM_12 | 327186 | 327695 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| GEGBNCDM_1 | 346683 | 348605 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| GEGBNCDM_12 | 325956 | 327158 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
| GEGBNCDM_5 | 137830 | 138717 | cblA | CblA family class A beta-lactamase | BLASTX | 99.32 | 100.00 | WP_005827792.1 |
| GEGBNCDM_23 | 124051 | 124848 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 89.85 | 100.00 | WP_002682030.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| GEGBNCDM_31 | 1779 | 2359 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GEGBNCDM_1 | 0.0 | 1.0 | 0.0 |
| GEGBNCDM_2 | 0.0 | 1.0 | 0.0 |
| GEGBNCDM_3 | 0.0 | 1.0 | 0.0 |
| GEGBNCDM_4 | 0.0 | 1.0 | 0.0 |
| GEGBNCDM_5 | 0.0 | 1.0 | 0.0 |
| GEGBNCDM_6 | 0.0 | 1.0 | 0.0 |
| GEGBNCDM_7 | 0.0 | 1.0 | 0.0 |
| GEGBNCDM_8 | 0.0 | 1.0 | 0.0 |
| GEGBNCDM_9 | 1.0 | 0.0 | 1.0 |
| GEGBNCDM_10 | 0.0 | 1.0 | 0.0 |
| GEGBNCDM_11 | 0.0 | 1.0 | 0.0 |
| GEGBNCDM_12 | 0.0 | 1.0 | 0.0 |
| GEGBNCDM_13 | 0.0 | 1.0 | 0.0 |
| GEGBNCDM_14 | 0.0 | 1.0 | 0.0 |
| GEGBNCDM_15 | 0.0 | 1.0 | 0.0 |
| GEGBNCDM_16 | 0.0 | 1.0 | 0.0 |
| GEGBNCDM_17 | 0.0 | 1.0 | 0.0 |
| GEGBNCDM_18 | 0.0 | 1.0 | 0.0 |
| GEGBNCDM_19 | 1.0 | 0.0 | 1.0 |
| GEGBNCDM_20 | 0.0 | 1.0 | 0.0 |
| GEGBNCDM_21 | 0.0 | 1.0 | 0.0 |
| GEGBNCDM_22 | 1.0 | 0.0 | 1.0 |
| GEGBNCDM_23 | 0.0 | 1.0 | 0.0 |
| GEGBNCDM_24 | 0.0 | 1.0 | 0.0 |
| GEGBNCDM_25 | 0.0 | 1.0 | 0.0 |
| GEGBNCDM_26 | 0.0 | 1.0 | 0.0 |
| GEGBNCDM_27 | 0.0 | 1.0 | 0.0 |
| GEGBNCDM_28 | 1.0 | 0.0 | 1.0 |
| GEGBNCDM_29 | 1.0 | 0.0 | 1.0 |
| GEGBNCDM_30 | 1.0 | 0.0 | 1.0 |
| GEGBNCDM_31 | 1.0 | 0.0 | 1.0 |
| GEGBNCDM_32 | 1.0 | 0.0 | 1.0 |
| GEGBNCDM_33 | 1.0 | 0.0 | 1.0 |
| GEGBNCDM_34 | 0.0 | 1.0 | 0.0 |
| GEGBNCDM_35 | 1.0 | 0.0 | 1.0 |
| GEGBNCDM_36 | 1.0 | 0.0 | 1.0 |
| GEGBNCDM_37 | 1.0 | 0.0 | 1.0 |
| GEGBNCDM_38 | 1.0 | 0.0 | 1.0 |
| GEGBNCDM_40 | 0.0 | 1.0 | 0.0 |
| GEGBNCDM_41 | 0.0 | 1.0 | 0.0 |
| GEGBNCDM_42 | 0.0 | 1.0 | 0.0 |
| GEGBNCDM_43 | 0.0 | 1.0 | 0.0 |
| GEGBNCDM_44 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)