Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HENPEIOL_13 | 86747 | 88669 | tet(W) | ARO:3000194 | tet(W) | 98.28 | 100.16 | AJ222769.3 |
| HENPEIOL_1 | 38865 | 42425 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 98.40 | 100.00 | NC_008618.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| HENPEIOL_13 | 86747 | 88669 | tet(W) | Doxycycline, Tetracycline, Minocycline | 99.38 | 100.00 | FN396364 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HENPEIOL_13 | 86747 | 88666 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.22 | 100.00 | WP_050618045.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HENPEIOL_1 | 0.0 | 1.0 | 0.0 |
| HENPEIOL_2 | 0.0 | 1.0 | 0.0 |
| HENPEIOL_3 | 0.0 | 1.0 | 0.0 |
| HENPEIOL_4 | 0.0 | 1.0 | 0.0 |
| HENPEIOL_5 | 1.0 | 0.0 | 1.0 |
| HENPEIOL_6 | 0.0 | 1.0 | 0.0 |
| HENPEIOL_7 | 0.0 | 1.0 | 0.0 |
| HENPEIOL_8 | 0.0 | 1.0 | 0.0 |
| HENPEIOL_9 | 0.0 | 1.0 | 0.0 |
| HENPEIOL_10 | 0.0 | 1.0 | 0.0 |
| HENPEIOL_11 | 0.0 | 1.0 | 0.0 |
| HENPEIOL_12 | 0.0 | 1.0 | 0.0 |
| HENPEIOL_13 | 0.0 | 1.0 | 0.0 |
| HENPEIOL_14 | 0.0 | 1.0 | 0.0 |
| HENPEIOL_15 | 1.0 | 0.0 | 1.0 |
| HENPEIOL_16 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HENPEIOL_9 | 206123 | 241176 | False | Siphoviridae | VOG0010, VOG4552, VOG3998, VOG4693, VOG7534, VOG2534, VOG2537, VOG4632, VOG7215, VOG2038, VOG3028, VOG4544, VOG0720, VOG4576, VOG4555, VOG3676, VOG1581, VOG3409, VOG1159, VOG4557, VOG8867, VOG8867, VOG6163, VOG9722, VOG3416, VOG4763 |
| HENPEIOL_9 | 360511 | 388705 | False | Siphoviridae | VOG4728, VOG0275, VOG0713, VOG2624, VOG4545, VOG9762, VOG4621, VOG1159, VOG1158, VOG1210, VOG4553, VOG4568, VOG4556, VOG4544, VOG0296, VOG2038, VOG0196, VOG0052, VOG4636, VOG9438, VOG1243, VOG0226, VOG1309, VOG4600 |
Phigaro v2.4.0 (Database: Jan. 2024 release)