Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| DBDAOGMJ_9 | 13399 | 14106 | WalR | 9.85e-117 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| DBDAOGMJ_23 | 69044 | 69241 | CspR | 2.47e-28 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| DBDAOGMJ_23 | 69044 | 69238 | CspA | 1.21e-27 | cold shock protein | 81.54 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DBDAOGMJ_1 | 0.0 | 1.0 | 0.0 |
| DBDAOGMJ_2 | 0.0 | 1.0 | 0.0 |
| DBDAOGMJ_3 | 0.0 | 1.0 | 0.0 |
| DBDAOGMJ_4 | 0.0 | 1.0 | 0.0 |
| DBDAOGMJ_5 | 0.0 | 1.0 | 0.0 |
| DBDAOGMJ_6 | 0.0 | 1.0 | 0.0 |
| DBDAOGMJ_7 | 0.0 | 1.0 | 0.0 |
| DBDAOGMJ_8 | 0.0 | 1.0 | 0.0 |
| DBDAOGMJ_9 | 0.0 | 1.0 | 0.0 |
| DBDAOGMJ_10 | 0.0 | 1.0 | 0.0 |
| DBDAOGMJ_11 | 0.0 | 1.0 | 0.0 |
| DBDAOGMJ_12 | 0.0 | 1.0 | 0.0 |
| DBDAOGMJ_13 | 0.0 | 1.0 | 0.0 |
| DBDAOGMJ_14 | 1.0 | 0.0 | 1.0 |
| DBDAOGMJ_15 | 1.0 | 0.0 | 1.0 |
| DBDAOGMJ_16 | 0.0 | 1.0 | 0.0 |
| DBDAOGMJ_17 | 1.0 | 0.0 | 1.0 |
| DBDAOGMJ_18 | 0.0 | 1.0 | 0.0 |
| DBDAOGMJ_19 | 1.0 | 0.0 | 1.0 |
| DBDAOGMJ_20 | 0.0 | 1.0 | 0.0 |
| DBDAOGMJ_21 | 0.0 | 1.0 | 0.0 |
| DBDAOGMJ_22 | 1.0 | 0.0 | 1.0 |
| DBDAOGMJ_23 | 0.0 | 1.0 | 0.0 |
| DBDAOGMJ_24 | 0.0 | 1.0 | 0.0 |
| DBDAOGMJ_25 | 0.0 | 1.0 | 0.0 |
| DBDAOGMJ_26 | 1.0 | 0.0 | 1.0 |
| DBDAOGMJ_27 | 1.0 | 0.0 | 1.0 |
| DBDAOGMJ_28 | 1.0 | 0.0 | 1.0 |
| DBDAOGMJ_29 | 1.0 | 0.0 | 1.0 |
| DBDAOGMJ_30 | 1.0 | 0.0 | 1.0 |
| DBDAOGMJ_31 | 1.0 | 0.0 | 1.0 |
| DBDAOGMJ_32 | 1.0 | 0.0 | 1.0 |
| DBDAOGMJ_33 | 1.0 | 0.0 | 1.0 |
| DBDAOGMJ_34 | 1.0 | 0.0 | 1.0 |
| DBDAOGMJ_35 | 1.0 | 0.0 | 1.0 |
| DBDAOGMJ_36 | 1.0 | 0.0 | 1.0 |
| DBDAOGMJ_37 | 1.0 | 0.0 | 1.0 |
| DBDAOGMJ_38 | 1.0 | 0.0 | 1.0 |
| DBDAOGMJ_45 | 0.0 | 1.0 | 0.0 |
| DBDAOGMJ_50 | 0.0 | 1.0 | 0.0 |
| DBDAOGMJ_51 | 0.0 | 1.0 | 0.0 |
| DBDAOGMJ_52 | 0.0 | 1.0 | 0.0 |
| DBDAOGMJ_53 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DBDAOGMJ_5 | 7855 | 18690 | False | Siphoviridae | VOG9763, VOG0698, VOG0697, VOG0696, VOG0695, VOG4555, VOG5847, VOG10527, VOG0692, VOG0691, VOG4544, VOG3699, VOG8681, VOG0198 |
| DBDAOGMJ_14 | 2492 | 16572 | False | Siphoviridae | VOG0801, VOG4545, VOG5852, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG3480, VOG4553, VOG4573, VOG4556, VOG1886, VOG4581, VOG4841 |
| DBDAOGMJ_16 | 4143 | 18787 | False | Siphoviridae | VOG3462, VOG0801, VOG6163, VOG0817, VOG0725, VOG0799, VOG0704, VOG4713, VOG1329, VOG4555, VOG4564 |
Phigaro v2.4.0 (Database: Jan. 2024 release)