Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 1 | 4.12 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FLPJECOF_33 | 239811 | 241736 | tet(Q) | ARO:3000191 | tet(Q) | 99.84 | 97.56 | Z21523.1 |
| FLPJECOF_28 | 16052 | 17713 | tet(Q) | ARO:3000191 | tet(Q) | 95.68 | 84.17 | Z21523.1 |
| FLPJECOF_14 | 1152 | 3077 | tet(Q) | ARO:3000191 | tet(Q) | 89.08 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| FLPJECOF_33 | 239811 | 241736 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.64 | 100.00 | Z21523 |
| FLPJECOF_14 | 64 | 865 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.38 | 100.00 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FLPJECOF_33 | 239814 | 241736 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.84 | 100.00 | WP_002560998.1 |
| FLPJECOF_28 | 16115 | 17710 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | PARTIALX | 99.44 | 83.00 | WP_063856407.1 |
| FLPJECOF_14 | 182 | 862 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | PARTIALX | 96.04 | 85.34 | WP_002682030.1 |
| FLPJECOF_14 | 1152 | 3074 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.55 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| FLPJECOF_12 | 261654 | 263234 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| FLPJECOF_1 | 0.0 | 1.0 | 0.0 |
| FLPJECOF_2 | 0.0 | 1.0 | 0.0 |
| FLPJECOF_3 | 0.0 | 1.0 | 0.0 |
| FLPJECOF_4 | 0.0 | 1.0 | 0.0 |
| FLPJECOF_5 | 0.0 | 1.0 | 0.0 |
| FLPJECOF_6 | 0.0 | 1.0 | 0.0 |
| FLPJECOF_7 | 0.0 | 1.0 | 0.0 |
| FLPJECOF_8 | 0.0 | 1.0 | 0.0 |
| FLPJECOF_9 | 0.0 | 1.0 | 0.0 |
| FLPJECOF_10 | 0.0 | 1.0 | 0.0 |
| FLPJECOF_11 | 0.0 | 1.0 | 0.0 |
| FLPJECOF_12 | 0.0 | 1.0 | 0.0 |
| FLPJECOF_13 | 0.0 | 1.0 | 0.0 |
| FLPJECOF_14 | 0.0 | 1.0 | 0.0 |
| FLPJECOF_15 | 0.0 | 1.0 | 0.0 |
| FLPJECOF_16 | 1.0 | 0.0 | 1.0 |
| FLPJECOF_17 | 0.0 | 1.0 | 0.0 |
| FLPJECOF_18 | 0.0 | 1.0 | 0.0 |
| FLPJECOF_19 | 0.0 | 1.0 | 0.0 |
| FLPJECOF_20 | 1.0 | 0.0 | 1.0 |
| FLPJECOF_21 | 1.0 | 0.0 | 1.0 |
| FLPJECOF_23 | 0.0 | 1.0 | 0.0 |
| FLPJECOF_28 | 0.0 | 1.0 | 0.0 |
| FLPJECOF_29 | 0.0 | 1.0 | 0.0 |
| FLPJECOF_30 | 0.0 | 1.0 | 0.0 |
| FLPJECOF_31 | 0.0 | 1.0 | 0.0 |
| FLPJECOF_32 | 0.0 | 1.0 | 0.0 |
| FLPJECOF_33 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| FLPJECOF_1 | 283636 | 289535 | False | Unknown | VOG4609, |
| FLPJECOF_1 | 496607 | 509239 | False | Siphoviridae | VOG6280, |
| FLPJECOF_30 | 92945 | 97165 | False | Myoviridae | VOG4552, |
| FLPJECOF_32 | 117319 | 125277 | False | Unknown | VOG7407, |
Phigaro v2.4.0 (Database: Jan. 2024 release)