Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 1 | 5.10 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| ODHNDBFJ_7 | 122290 | 123495 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
| ODHNDBFJ_5 | 75854 | 76654 | ErmF | ARO:3000498 | ErmF | 98.50 | 100.00 | M17124.1 |
| ODHNDBFJ_20 | 45677 | 47602 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| ODHNDBFJ_10 | 3790 | 4752 | CfxA3 | ARO:3003003 | CfxA3 | 99.38 | 99.69 | AF472622.2 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| ODHNDBFJ_20 | 45677 | 47602 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| ODHNDBFJ_10 | 3790 | 4752 | cfxA3 | Ampicillin | 99.59 | 99.69 | AF472622 |
| ODHNDBFJ_10 | 3790 | 4752 | cfxA4 | Unknown Beta-lactam | 99.59 | 99.69 | AY769933 |
| ODHNDBFJ_10 | 3790 | 4752 | cfxA5 | Unknown Beta-lactam | 99.59 | 99.69 | AY769934 |
| ODHNDBFJ_5 | 75854 | 76654 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| ODHNDBFJ_20 | 45680 | 47602 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| ODHNDBFJ_7 | 122293 | 123495 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
| ODHNDBFJ_7 | 121756 | 122265 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | BLASTX | 99.41 | 100.00 | WP_004308783.1 |
| ODHNDBFJ_10 | 3790 | 4749 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 99.38 | 100.00 | WP_004339683.1 |
| ODHNDBFJ_5 | 75857 | 76654 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| ODHNDBFJ_34 | 44560 | 46140 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| ODHNDBFJ_1 | 0.0 | 1.0 | 0.0 |
| ODHNDBFJ_2 | 0.0 | 1.0 | 0.0 |
| ODHNDBFJ_3 | 0.0 | 1.0 | 0.0 |
| ODHNDBFJ_4 | 0.0 | 1.0 | 0.0 |
| ODHNDBFJ_5 | 0.0 | 1.0 | 0.0 |
| ODHNDBFJ_6 | 0.0 | 1.0 | 0.0 |
| ODHNDBFJ_7 | 0.0 | 1.0 | 0.0 |
| ODHNDBFJ_8 | 0.0 | 1.0 | 0.0 |
| ODHNDBFJ_9 | 0.0 | 1.0 | 0.0 |
| ODHNDBFJ_10 | 0.0 | 1.0 | 0.0 |
| ODHNDBFJ_11 | 0.0 | 1.0 | 0.0 |
| ODHNDBFJ_12 | 0.0 | 1.0 | 0.0 |
| ODHNDBFJ_13 | 0.0 | 1.0 | 0.0 |
| ODHNDBFJ_14 | 0.0 | 1.0 | 0.0 |
| ODHNDBFJ_15 | 0.0 | 1.0 | 0.0 |
| ODHNDBFJ_16 | 0.0 | 1.0 | 0.0 |
| ODHNDBFJ_17 | 0.0 | 1.0 | 0.0 |
| ODHNDBFJ_18 | 0.0 | 1.0 | 0.0 |
| ODHNDBFJ_19 | 0.0 | 1.0 | 0.0 |
| ODHNDBFJ_20 | 0.0 | 1.0 | 0.0 |
| ODHNDBFJ_21 | 0.0 | 1.0 | 0.0 |
| ODHNDBFJ_22 | 0.0 | 1.0 | 0.0 |
| ODHNDBFJ_23 | 0.0 | 1.0 | 0.0 |
| ODHNDBFJ_24 | 0.0 | 1.0 | 0.0 |
| ODHNDBFJ_25 | 0.0 | 1.0 | 0.0 |
| ODHNDBFJ_26 | 0.0 | 1.0 | 0.0 |
| ODHNDBFJ_27 | 0.0 | 1.0 | 0.0 |
| ODHNDBFJ_28 | 0.0 | 1.0 | 0.0 |
| ODHNDBFJ_29 | 0.0 | 1.0 | 0.0 |
| ODHNDBFJ_30 | 0.0 | 1.0 | 0.0 |
| ODHNDBFJ_31 | 0.0 | 1.0 | 0.0 |
| ODHNDBFJ_32 | 0.0 | 1.0 | 0.0 |
| ODHNDBFJ_33 | 0.0 | 1.0 | 0.0 |
| ODHNDBFJ_34 | 0.0 | 1.0 | 0.0 |
| ODHNDBFJ_35 | 0.0 | 1.0 | 0.0 |
| ODHNDBFJ_36 | 0.0 | 1.0 | 0.0 |
| ODHNDBFJ_37 | 1.0 | 0.0 | 1.0 |
| ODHNDBFJ_38 | 0.0 | 1.0 | 0.0 |
| ODHNDBFJ_39 | 0.0 | 1.0 | 0.0 |
| ODHNDBFJ_40 | 0.0 | 1.0 | 0.0 |
| ODHNDBFJ_41 | 0.0 | 1.0 | 0.0 |
| ODHNDBFJ_42 | 1.0 | 0.0 | 1.0 |
| ODHNDBFJ_43 | 1.0 | 0.0 | 1.0 |
| ODHNDBFJ_44 | 0.0 | 1.0 | 0.0 |
| ODHNDBFJ_45 | 0.0 | 1.0 | 0.0 |
| ODHNDBFJ_46 | 1.0 | 0.0 | 1.0 |
| ODHNDBFJ_47 | 1.0 | 0.0 | 1.0 |
| ODHNDBFJ_48 | 1.0 | 0.0 | 1.0 |
| ODHNDBFJ_49 | 1.0 | 0.0 | 1.0 |
| ODHNDBFJ_50 | 1.0 | 0.0 | 1.0 |
| ODHNDBFJ_51 | 1.0 | 0.0 | 1.0 |
| ODHNDBFJ_52 | 1.0 | 0.0 | 1.0 |
| ODHNDBFJ_53 | 1.0 | 0.0 | 1.0 |
| ODHNDBFJ_54 | 0.0 | 1.0 | 0.0 |
| ODHNDBFJ_55 | 1.0 | 0.0 | 1.0 |
| ODHNDBFJ_56 | 0.0 | 1.0 | 0.0 |
| ODHNDBFJ_57 | 1.0 | 0.0 | 1.0 |
| ODHNDBFJ_65 | 0.0 | 1.0 | 0.0 |
| ODHNDBFJ_66 | 0.0 | 1.0 | 0.0 |
| ODHNDBFJ_67 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| ODHNDBFJ_1 | 13519 | 18045 | False | Unknown | VOG5023, |
| ODHNDBFJ_23 | 168715 | 185822 | False | Myoviridae | VOG0133, |
Phigaro v2.4.0 (Database: Jan. 2024 release)