Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 1 | 5.10 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FHEICDOF_23 | 373435 | 375360 | tet(Q) | ARO:3000191 | tet(Q) | 97.04 | 97.56 | Z21523.1 |
| FHEICDOF_35 | 1251 | 2456 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
| FHEICDOF_53 | 1097 | 2011 | EstT | ARO:3007459 | EstT | 98.69 | 99.35 | CP094932.1 |
| FHEICDOF_53 | 87 | 887 | ErmF | ARO:3000498 | ErmF | 98.12 | 100.00 | M17124.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| FHEICDOF_23 | 373435 | 375360 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | X58717 |
| FHEICDOF_53 | 87 | 887 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.38 | 100.00 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FHEICDOF_35 | 2481 | 2990 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| FHEICDOF_23 | 373438 | 375360 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_004293868.1 |
| FHEICDOF_35 | 1251 | 2453 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
| FHEICDOF_53 | 1100 | 1939 | estT | macrolide hydrolase EstT | BLASTX | 98.58 | 100.00 | WP_185148407.1 |
| FHEICDOF_53 | 87 | 884 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.50 | 100.00 | WP_002682030.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| FHEICDOF_5 | 94349 | 92769 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| FHEICDOF_1 | 0.0 | 1.0 | 0.0 |
| FHEICDOF_2 | 0.0 | 1.0 | 0.0 |
| FHEICDOF_3 | 0.0 | 1.0 | 0.0 |
| FHEICDOF_4 | 0.0 | 1.0 | 0.0 |
| FHEICDOF_5 | 0.0 | 1.0 | 0.0 |
| FHEICDOF_6 | 0.0 | 1.0 | 0.0 |
| FHEICDOF_7 | 0.0 | 1.0 | 0.0 |
| FHEICDOF_8 | 0.0 | 1.0 | 0.0 |
| FHEICDOF_9 | 0.0 | 1.0 | 0.0 |
| FHEICDOF_10 | 0.0 | 1.0 | 0.0 |
| FHEICDOF_11 | 0.0 | 1.0 | 0.0 |
| FHEICDOF_12 | 0.0 | 1.0 | 0.0 |
| FHEICDOF_13 | 0.0 | 1.0 | 0.0 |
| FHEICDOF_14 | 0.0 | 1.0 | 0.0 |
| FHEICDOF_15 | 0.0 | 1.0 | 0.0 |
| FHEICDOF_16 | 0.0 | 1.0 | 0.0 |
| FHEICDOF_17 | 0.0 | 1.0 | 0.0 |
| FHEICDOF_18 | 0.0 | 1.0 | 0.0 |
| FHEICDOF_19 | 0.0 | 1.0 | 0.0 |
| FHEICDOF_20 | 0.0 | 1.0 | 0.0 |
| FHEICDOF_21 | 0.0 | 1.0 | 0.0 |
| FHEICDOF_22 | 0.0 | 1.0 | 0.0 |
| FHEICDOF_23 | 0.0 | 1.0 | 0.0 |
| FHEICDOF_24 | 0.0 | 1.0 | 0.0 |
| FHEICDOF_25 | 0.0 | 1.0 | 0.0 |
| FHEICDOF_26 | 0.0 | 1.0 | 0.0 |
| FHEICDOF_27 | 0.0 | 1.0 | 0.0 |
| FHEICDOF_28 | 0.0 | 1.0 | 0.0 |
| FHEICDOF_29 | 0.0 | 1.0 | 0.0 |
| FHEICDOF_30 | 1.0 | 0.0 | 1.0 |
| FHEICDOF_31 | 0.0 | 1.0 | 0.0 |
| FHEICDOF_32 | 0.0 | 1.0 | 0.0 |
| FHEICDOF_33 | 0.0 | 1.0 | 0.0 |
| FHEICDOF_34 | 0.0 | 1.0 | 0.0 |
| FHEICDOF_35 | 0.0 | 1.0 | 0.0 |
| FHEICDOF_36 | 0.0 | 1.0 | 0.0 |
| FHEICDOF_37 | 0.0 | 1.0 | 0.0 |
| FHEICDOF_38 | 1.0 | 0.0 | 1.0 |
| FHEICDOF_39 | 0.0 | 1.0 | 0.0 |
| FHEICDOF_40 | 0.0 | 1.0 | 0.0 |
| FHEICDOF_41 | 0.0 | 1.0 | 0.0 |
| FHEICDOF_42 | 0.0 | 1.0 | 0.0 |
| FHEICDOF_43 | 0.0 | 1.0 | 0.0 |
| FHEICDOF_44 | 1.0 | 0.0 | 1.0 |
| FHEICDOF_45 | 0.0 | 1.0 | 0.0 |
| FHEICDOF_46 | 0.0 | 1.0 | 0.0 |
| FHEICDOF_47 | 1.0 | 0.0 | 1.0 |
| FHEICDOF_48 | 0.0 | 1.0 | 0.0 |
| FHEICDOF_49 | 0.0 | 1.0 | 0.0 |
| FHEICDOF_50 | 1.0 | 0.0 | 1.0 |
| FHEICDOF_51 | 0.0 | 1.0 | 0.0 |
| FHEICDOF_52 | 0.0 | 1.0 | 0.0 |
| FHEICDOF_53 | 1.0 | 0.0 | 1.0 |
| FHEICDOF_54 | 1.0 | 0.0 | 1.0 |
| FHEICDOF_55 | 1.0 | 0.0 | 1.0 |
| FHEICDOF_56 | 0.0 | 1.0 | 0.0 |
| FHEICDOF_57 | 1.0 | 0.0 | 1.0 |
| FHEICDOF_59 | 0.0 | 1.0 | 0.0 |
| FHEICDOF_60 | 0.0 | 1.0 | 0.0 |
| FHEICDOF_61 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)