Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NIMJMMKK_24 | 32734 | 34659 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| NIMJMMKK_32 | 14967 | 15818 | ErmF | ARO:3000498 | ErmF | 98.50 | 106.39 | M17124.1 |
| NIMJMMKK_32 | 12755 | 14680 | tet(Q) | ARO:3000191 | tet(Q) | 89.08 | 97.56 | Z21523.1 |
| NIMJMMKK_28 | 116 | 1006 | CblA-1 | ARO:3002999 | CblA-1 | 96.28 | 100.00 | GQ343019.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| NIMJMMKK_24 | 32734 | 34659 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| NIMJMMKK_32 | 14967 | 15767 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NIMJMMKK_24 | 32737 | 34659 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| NIMJMMKK_32 | 14970 | 15767 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
| NIMJMMKK_28 | 116 | 1003 | cblA | CblA family class A beta-lactamase | BLASTX | 96.28 | 100.00 | WP_005827792.1 |
| NIMJMMKK_32 | 12758 | 14680 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.55 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NIMJMMKK_1 | 0.0 | 1.0 | 0.0 |
| NIMJMMKK_2 | 0.0 | 1.0 | 0.0 |
| NIMJMMKK_3 | 0.0 | 1.0 | 0.0 |
| NIMJMMKK_4 | 0.0 | 1.0 | 0.0 |
| NIMJMMKK_5 | 0.0 | 1.0 | 0.0 |
| NIMJMMKK_6 | 0.0 | 1.0 | 0.0 |
| NIMJMMKK_7 | 0.0 | 1.0 | 0.0 |
| NIMJMMKK_8 | 0.0 | 1.0 | 0.0 |
| NIMJMMKK_9 | 0.0 | 1.0 | 0.0 |
| NIMJMMKK_10 | 0.0 | 1.0 | 0.0 |
| NIMJMMKK_11 | 0.0 | 1.0 | 0.0 |
| NIMJMMKK_12 | 0.0 | 1.0 | 0.0 |
| NIMJMMKK_13 | 0.0 | 1.0 | 0.0 |
| NIMJMMKK_14 | 0.0 | 1.0 | 0.0 |
| NIMJMMKK_15 | 0.0 | 1.0 | 0.0 |
| NIMJMMKK_16 | 0.0 | 1.0 | 0.0 |
| NIMJMMKK_17 | 0.0 | 1.0 | 0.0 |
| NIMJMMKK_18 | 0.0 | 1.0 | 0.0 |
| NIMJMMKK_19 | 0.0 | 1.0 | 0.0 |
| NIMJMMKK_20 | 0.0 | 1.0 | 0.0 |
| NIMJMMKK_21 | 0.0 | 1.0 | 0.0 |
| NIMJMMKK_22 | 0.0 | 1.0 | 0.0 |
| NIMJMMKK_23 | 0.0 | 1.0 | 0.0 |
| NIMJMMKK_24 | 0.0 | 1.0 | 0.0 |
| NIMJMMKK_25 | 0.0 | 1.0 | 0.0 |
| NIMJMMKK_26 | 0.0 | 1.0 | 0.0 |
| NIMJMMKK_27 | 1.0 | 0.0 | 1.0 |
| NIMJMMKK_28 | 0.0 | 1.0 | 0.0 |
| NIMJMMKK_29 | 0.0 | 1.0 | 0.0 |
| NIMJMMKK_30 | 0.0 | 1.0 | 0.0 |
| NIMJMMKK_31 | 1.0 | 0.0 | 1.0 |
| NIMJMMKK_32 | 0.0 | 1.0 | 0.0 |
| NIMJMMKK_33 | 1.0 | 0.0 | 1.0 |
| NIMJMMKK_34 | 0.0 | 1.0 | 0.0 |
| NIMJMMKK_35 | 1.0 | 0.0 | 1.0 |
| NIMJMMKK_36 | 0.0 | 1.0 | 0.0 |
| NIMJMMKK_37 | 0.0 | 1.0 | 0.0 |
| NIMJMMKK_38 | 1.0 | 0.0 | 1.0 |
| NIMJMMKK_39 | 0.0 | 1.0 | 0.0 |
| NIMJMMKK_40 | 0.0 | 1.0 | 0.0 |
| NIMJMMKK_41 | 1.0 | 0.0 | 1.0 |
| NIMJMMKK_42 | 0.0 | 1.0 | 0.0 |
| NIMJMMKK_43 | 0.0 | 1.0 | 0.0 |
| NIMJMMKK_44 | 1.0 | 0.0 | 1.0 |
| NIMJMMKK_45 | 0.0 | 1.0 | 0.0 |
| NIMJMMKK_46 | 0.0 | 1.0 | 0.0 |
| NIMJMMKK_47 | 1.0 | 0.0 | 1.0 |
| NIMJMMKK_48 | 0.0 | 1.0 | 0.0 |
| NIMJMMKK_49 | 0.0 | 1.0 | 0.0 |
| NIMJMMKK_50 | 0.0 | 1.0 | 0.0 |
| NIMJMMKK_51 | 1.0 | 0.0 | 1.0 |
| NIMJMMKK_52 | 1.0 | 0.0 | 1.0 |
| NIMJMMKK_53 | 0.0 | 1.0 | 0.0 |
| NIMJMMKK_54 | 1.0 | 0.0 | 1.0 |
| NIMJMMKK_55 | 0.0 | 1.0 | 0.0 |
| NIMJMMKK_56 | 0.0 | 1.0 | 0.0 |
| NIMJMMKK_57 | 1.0 | 0.0 | 1.0 |
| NIMJMMKK_58 | 1.0 | 0.0 | 1.0 |
| NIMJMMKK_59 | 1.0 | 0.0 | 1.0 |
| NIMJMMKK_60 | 1.0 | 0.0 | 1.0 |
| NIMJMMKK_62 | 0.0 | 1.0 | 0.0 |
| NIMJMMKK_63 | 0.0 | 1.0 | 0.0 |
| NIMJMMKK_64 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NIMJMMKK_18 | 42703 | 52811 | True | Unknown | VOG0249, |
| NIMJMMKK_45 | 87830 | 100953 | False | Unknown | VOG0982, |
Phigaro v2.4.0 (Database: Jan. 2024 release)