Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NFHHFLBI_1 | 804678 | 805643 | CfxA2 | ARO:3003002 | CfxA2 | 100.00 | 100.00 | AF118110.1 |
| NFHHFLBI_34 | 258037 | 258837 | ErmF | ARO:3000498 | ErmF | 98.50 | 100.00 | M17124.1 |
| NFHHFLBI_6 | 1097 | 3071 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 97.56 | Z21523.1 |
| NFHHFLBI_15 | 83 | 985 | cepA | ARO:3003559 | cepA | 99.67 | 100.00 | U05883.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| NFHHFLBI_15 | 83 | 985 | cepA | Unknown Beta-lactam | 100.00 | 100.00 | FR688022 |
| NFHHFLBI_6 | 1097 | 3022 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | Z21523 |
| NFHHFLBI_1 | 804678 | 805643 | cfxA3 | Ampicillin | 99.90 | 100.00 | AF472622 |
| NFHHFLBI_1 | 804678 | 805643 | cfxA4 | Unknown Beta-lactam | 99.90 | 100.00 | AY769933 |
| NFHHFLBI_1 | 804678 | 805643 | cfxA5 | Unknown Beta-lactam | 99.90 | 100.00 | AY769934 |
| NFHHFLBI_1 | 804678 | 805643 | cfxA | Cefoxitin, Ampicillin | 99.90 | 100.00 | U38243 |
| NFHHFLBI_34 | 258037 | 258837 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NFHHFLBI_15 | 83 | 982 | cepA | CepA family extended-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005816369.1 |
| NFHHFLBI_1 | 804681 | 805643 | cfxA | CfxA family broad-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_004339683.1 |
| NFHHFLBI_6 | 1100 | 3022 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_002560998.1 |
| NFHHFLBI_34 | 258040 | 258837 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NFHHFLBI_1 | 0.0 | 1.0 | 0.0 |
| NFHHFLBI_2 | 0.0 | 1.0 | 0.0 |
| NFHHFLBI_3 | 0.0 | 1.0 | 0.0 |
| NFHHFLBI_4 | 0.0 | 1.0 | 0.0 |
| NFHHFLBI_5 | 0.0 | 1.0 | 0.0 |
| NFHHFLBI_6 | 0.0 | 1.0 | 0.0 |
| NFHHFLBI_7 | 0.0 | 1.0 | 0.0 |
| NFHHFLBI_8 | 0.0 | 1.0 | 0.0 |
| NFHHFLBI_9 | 0.0 | 1.0 | 0.0 |
| NFHHFLBI_10 | 0.0 | 1.0 | 0.0 |
| NFHHFLBI_11 | 0.0 | 1.0 | 0.0 |
| NFHHFLBI_12 | 0.0 | 1.0 | 0.0 |
| NFHHFLBI_13 | 0.0 | 1.0 | 0.0 |
| NFHHFLBI_14 | 0.0 | 1.0 | 0.0 |
| NFHHFLBI_15 | 0.0 | 1.0 | 0.0 |
| NFHHFLBI_16 | 0.0 | 1.0 | 0.0 |
| NFHHFLBI_17 | 0.0 | 1.0 | 0.0 |
| NFHHFLBI_18 | 0.0 | 1.0 | 0.0 |
| NFHHFLBI_19 | 0.0 | 1.0 | 0.0 |
| NFHHFLBI_20 | 0.0 | 1.0 | 0.0 |
| NFHHFLBI_21 | 0.0 | 1.0 | 0.0 |
| NFHHFLBI_22 | 0.0 | 1.0 | 0.0 |
| NFHHFLBI_23 | 0.0 | 1.0 | 0.0 |
| NFHHFLBI_24 | 1.0 | 0.0 | 1.0 |
| NFHHFLBI_25 | 0.0 | 1.0 | 0.0 |
| NFHHFLBI_26 | 1.0 | 0.0 | 1.0 |
| NFHHFLBI_27 | 0.0 | 1.0 | 0.0 |
| NFHHFLBI_28 | 1.0 | 0.0 | 1.0 |
| NFHHFLBI_29 | 0.0 | 1.0 | 0.0 |
| NFHHFLBI_30 | 1.0 | 0.0 | 1.0 |
| NFHHFLBI_31 | 0.0 | 1.0 | 0.0 |
| NFHHFLBI_32 | 1.0 | 0.0 | 1.0 |
| NFHHFLBI_33 | 1.0 | 0.0 | 1.0 |
| NFHHFLBI_34 | 0.0 | 1.0 | 0.0 |
| NFHHFLBI_35 | 0.0 | 1.0 | 0.0 |
| NFHHFLBI_37 | 0.0 | 1.0 | 0.0 |
| NFHHFLBI_45 | 0.0 | 1.0 | 0.0 |
| NFHHFLBI_56 | 0.0 | 1.0 | 0.0 |
| NFHHFLBI_59 | 0.0 | 1.0 | 0.0 |
| NFHHFLBI_60 | 0.0 | 1.0 | 0.0 |
| NFHHFLBI_61 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NFHHFLBI_1 | 664155 | 673244 | False | Siphoviridae | VOG4841, |
| NFHHFLBI_56 | 58027 | 62258 | False | Unknown | VOG4544, |
Phigaro v2.4.0 (Database: Jan. 2024 release)