Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HEMKBCAH_1 | 737714 | 738352 | ErmG | ARO:3000522 | ErmG | 98.05 | 86.89 | L42817.1 |
| HEMKBCAH_1 | 675454 | 676356 | CepA-44 | ARO:3006225 | CepA-44 | 99.33 | 100.00 | NG_050386.1 |
| HEMKBCAH_25 | 155880 | 157854 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| HEMKBCAH_25 | 155880 | 157805 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | Z21523 |
| HEMKBCAH_1 | 675454 | 676356 | cepA | Unknown Beta-lactam | 99.56 | 100.00 | U05887 |
| HEMKBCAH_1 | 737617 | 738352 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 98.91 | 100.00 | M15332 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HEMKBCAH_25 | 155883 | 157805 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_002560998.1 |
| HEMKBCAH_1 | 675454 | 676353 | cepA | CepA family extended-spectrum class A beta-lactamase | BLASTX | 99.67 | 100.00 | WP_005816369.1 |
| HEMKBCAH_1 | 737726 | 738352 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | PARTIALX | 96.65 | 85.66 | WP_014387027.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HEMKBCAH_1 | 0.0 | 1.0 | 0.0 |
| HEMKBCAH_2 | 0.0 | 1.0 | 0.0 |
| HEMKBCAH_3 | 0.0 | 1.0 | 0.0 |
| HEMKBCAH_4 | 0.0 | 1.0 | 0.0 |
| HEMKBCAH_5 | 0.0 | 1.0 | 0.0 |
| HEMKBCAH_6 | 0.0 | 1.0 | 0.0 |
| HEMKBCAH_7 | 0.0 | 1.0 | 0.0 |
| HEMKBCAH_8 | 0.0 | 1.0 | 0.0 |
| HEMKBCAH_9 | 0.0 | 1.0 | 0.0 |
| HEMKBCAH_10 | 0.0 | 1.0 | 0.0 |
| HEMKBCAH_11 | 0.0 | 1.0 | 0.0 |
| HEMKBCAH_12 | 0.0 | 1.0 | 0.0 |
| HEMKBCAH_13 | 0.0 | 1.0 | 0.0 |
| HEMKBCAH_14 | 0.0 | 1.0 | 0.0 |
| HEMKBCAH_15 | 1.0 | 0.0 | 1.0 |
| HEMKBCAH_16 | 1.0 | 0.0 | 1.0 |
| HEMKBCAH_17 | 0.0 | 1.0 | 0.0 |
| HEMKBCAH_18 | 1.0 | 0.0 | 1.0 |
| HEMKBCAH_19 | 1.0 | 0.0 | 1.0 |
| HEMKBCAH_20 | 1.0 | 0.0 | 1.0 |
| HEMKBCAH_21 | 1.0 | 0.0 | 1.0 |
| HEMKBCAH_23 | 0.0 | 1.0 | 0.0 |
| HEMKBCAH_25 | 0.0 | 1.0 | 0.0 |
| HEMKBCAH_26 | 0.0 | 1.0 | 0.0 |
| HEMKBCAH_27 | 0.0 | 1.0 | 0.0 |
| HEMKBCAH_28 | 0.0 | 1.0 | 0.0 |
| HEMKBCAH_29 | 0.0 | 1.0 | 0.0 |
| HEMKBCAH_30 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HEMKBCAH_7 | 7004 | 11567 | False | Siphoviridae | VOG4568, |
Phigaro v2.4.0 (Database: Jan. 2024 release)