Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| ODBDCEGG_13 | 331119 | 331919 | ErmF | ARO:3000498 | ErmF | 98.50 | 100.00 | M17124.1 |
| ODBDCEGG_22 | 8171 | 10096 | tet(Q) | ARO:3000191 | tet(Q) | 96.72 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| ODBDCEGG_13 | 331119 | 331919 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
| ODBDCEGG_22 | 8171 | 10096 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 98.13 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| ODBDCEGG_13 | 331122 | 331919 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
| ODBDCEGG_22 | 8174 | 10096 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 98.28 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| ODBDCEGG_1 | 0.0 | 1.0 | 0.0 |
| ODBDCEGG_2 | 0.0 | 1.0 | 0.0 |
| ODBDCEGG_4 | 0.0 | 1.0 | 0.0 |
| ODBDCEGG_5 | 0.0 | 1.0 | 0.0 |
| ODBDCEGG_6 | 0.0 | 1.0 | 0.0 |
| ODBDCEGG_7 | 0.0 | 1.0 | 0.0 |
| ODBDCEGG_8 | 0.0 | 1.0 | 0.0 |
| ODBDCEGG_9 | 0.0 | 1.0 | 0.0 |
| ODBDCEGG_10 | 0.0 | 1.0 | 0.0 |
| ODBDCEGG_11 | 0.0 | 1.0 | 0.0 |
| ODBDCEGG_12 | 0.0 | 1.0 | 0.0 |
| ODBDCEGG_13 | 0.0 | 1.0 | 0.0 |
| ODBDCEGG_14 | 0.0 | 1.0 | 0.0 |
| ODBDCEGG_15 | 0.0 | 1.0 | 0.0 |
| ODBDCEGG_16 | 0.0 | 1.0 | 0.0 |
| ODBDCEGG_17 | 0.0 | 1.0 | 0.0 |
| ODBDCEGG_18 | 0.0 | 1.0 | 0.0 |
| ODBDCEGG_19 | 0.0 | 1.0 | 0.0 |
| ODBDCEGG_20 | 0.0 | 1.0 | 0.0 |
| ODBDCEGG_21 | 0.0 | 1.0 | 0.0 |
| ODBDCEGG_22 | 0.0 | 1.0 | 0.0 |
| ODBDCEGG_23 | 0.0 | 1.0 | 0.0 |
| ODBDCEGG_24 | 0.0 | 1.0 | 0.0 |
| ODBDCEGG_25 | 0.0 | 1.0 | 0.0 |
| ODBDCEGG_26 | 0.0 | 1.0 | 0.0 |
| ODBDCEGG_27 | 0.0 | 1.0 | 0.0 |
| ODBDCEGG_28 | 0.0 | 1.0 | 0.0 |
| ODBDCEGG_29 | 0.0 | 1.0 | 0.0 |
| ODBDCEGG_30 | 0.0 | 1.0 | 0.0 |
| ODBDCEGG_31 | 0.0 | 1.0 | 0.0 |
| ODBDCEGG_32 | 0.0 | 1.0 | 0.0 |
| ODBDCEGG_33 | 0.0 | 1.0 | 0.0 |
| ODBDCEGG_34 | 0.0 | 1.0 | 0.0 |
| ODBDCEGG_35 | 0.0 | 1.0 | 0.0 |
| ODBDCEGG_36 | 0.0 | 1.0 | 0.0 |
| ODBDCEGG_37 | 0.0 | 1.0 | 0.0 |
| ODBDCEGG_38 | 0.0 | 1.0 | 0.0 |
| ODBDCEGG_39 | 0.0 | 1.0 | 0.0 |
| ODBDCEGG_40 | 1.0 | 0.0 | 1.0 |
| ODBDCEGG_41 | 0.0 | 1.0 | 0.0 |
| ODBDCEGG_42 | 1.0 | 0.0 | 1.0 |
| ODBDCEGG_43 | 0.0 | 1.0 | 0.0 |
| ODBDCEGG_44 | 1.0 | 0.0 | 1.0 |
| ODBDCEGG_45 | 0.0 | 1.0 | 0.0 |
| ODBDCEGG_46 | 0.0 | 1.0 | 0.0 |
| ODBDCEGG_47 | 1.0 | 0.0 | 1.0 |
| ODBDCEGG_48 | 0.0 | 1.0 | 0.0 |
| ODBDCEGG_49 | 1.0 | 0.0 | 1.0 |
| ODBDCEGG_50 | 1.0 | 0.0 | 1.0 |
| ODBDCEGG_51 | 1.0 | 0.0 | 1.0 |
| ODBDCEGG_52 | 0.0 | 1.0 | 0.0 |
| ODBDCEGG_53 | 0.0 | 1.0 | 0.0 |
| ODBDCEGG_54 | 0.0 | 1.0 | 0.0 |
| ODBDCEGG_55 | 0.0 | 1.0 | 0.0 |
| ODBDCEGG_56 | 1.0 | 0.0 | 1.0 |
| ODBDCEGG_57 | 0.0 | 1.0 | 0.0 |
| ODBDCEGG_58 | 0.0 | 1.0 | 0.0 |
| ODBDCEGG_59 | 1.0 | 0.0 | 1.0 |
| ODBDCEGG_60 | 1.0 | 0.0 | 1.0 |
| ODBDCEGG_61 | 0.0 | 1.0 | 0.0 |
| ODBDCEGG_62 | 1.0 | 0.0 | 1.0 |
| ODBDCEGG_63 | 1.0 | 0.0 | 1.0 |
| ODBDCEGG_64 | 0.0 | 1.0 | 0.0 |
| ODBDCEGG_65 | 1.0 | 0.0 | 1.0 |
| ODBDCEGG_66 | 1.0 | 0.0 | 1.0 |
| ODBDCEGG_67 | 0.0 | 1.0 | 0.0 |
| ODBDCEGG_68 | 0.0 | 1.0 | 0.0 |
| ODBDCEGG_69 | 1.0 | 0.0 | 1.0 |
| ODBDCEGG_70 | 1.0 | 0.0 | 1.0 |
| ODBDCEGG_71 | 1.0 | 0.0 | 1.0 |
| ODBDCEGG_72 | 1.0 | 0.0 | 1.0 |
| ODBDCEGG_73 | 0.0 | 1.0 | 0.0 |
| ODBDCEGG_74 | 0.0 | 1.0 | 0.0 |
| ODBDCEGG_75 | 1.0 | 0.0 | 1.0 |
| ODBDCEGG_76 | 1.0 | 0.0 | 1.0 |
| ODBDCEGG_77 | 0.0 | 1.0 | 0.0 |
| ODBDCEGG_78 | 1.0 | 0.0 | 1.0 |
| ODBDCEGG_79 | 0.0 | 1.0 | 0.0 |
| ODBDCEGG_80 | 1.0 | 0.0 | 1.0 |
| ODBDCEGG_81 | 0.0 | 1.0 | 0.0 |
| ODBDCEGG_82 | 1.0 | 0.0 | 1.0 |
| ODBDCEGG_83 | 1.0 | 0.0 | 1.0 |
| ODBDCEGG_84 | 1.0 | 0.0 | 1.0 |
| ODBDCEGG_85 | 1.0 | 0.0 | 1.0 |
| ODBDCEGG_90 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| ODBDCEGG_8 | 89862 | 95123 | False | Unknown | VOG4548, |
| ODBDCEGG_20 | 13200 | 20744 | False | Siphoviridae | VOG7238, |
Phigaro v2.4.0 (Database: Jan. 2024 release)